Marinobacter alkaliphilus: PBN92_00350
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Entry
PBN92_00350 CDS
T08753
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mall
Marinobacter alkaliphilus
Brite
KEGG Orthology (KO) [BR:
mall00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mall03019
]
PBN92_00350 (hrpB)
Enzymes [BR:
mall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PBN92_00350 (hrpB)
Messenger RNA biogenesis [BR:
mall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PBN92_00350 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WBU41388
LinkDB
All DBs
Position
81599..84073
Genome browser
AA seq
824 aa
AA seq
DB search
MLPIEHILPELKQTLNQGTTALLQAPPGAGKTTRVPLALLDAPWRDNRKILMLEPRRLAA
RSAARYMAKQLGEAPGQTVGYRTRLDTKVSGSTRIEVVTEGILTRLIQNDPMLEDYAAVL
FDEFHERSLQADLGLALVRESQQALREDLRLLVMSATLDTAPIARVLGNVPVITSEGRAF
PVEVLYRPLPRNARMVDQIVAAVHEALGAQTGSMLVFLPGAGEIRRVAQQLAGQLPDNVV
LAPLYGNLKAEEQDRAISPAQDGTRKIVLATAIAETSLTIEGVRVVVDAGQQRRAVFDPN
SGMTRLVTGRVSKASAEQRKGRAGRVEPGVCYRLWSESEQFGLADYTPPEIQQADLAPLV
LELAQWGARSPEQVVWIDTPPKAHWQQAVALLQWLDLLDAEGAITDHGKAARELGLHPRL
AHMVIKGRALGLGQLAAELAALLEERDLLGPGSGADLPERIRVLRGERGHRGLDTARLQA
VRQAAKRLCRGQLAQDLPSETDVGRVLARAYPDRIARRRSGAMPRYQLSNGKGAVLREDD
PLARQDWLVAAELDGKAREATIYLAAPVDLADLEQDLSNHIEEREEAVWDDKRGTIVARR
VRKLGALVLAEKPLNQVAPELVQQGLLDAVRRKGLDSLPWSDAARQWVARVRLLAGQFPG
DWPEISDQSLLDTLETWLAPFMAGMKRWSDLAGINLVQALNALLDYPQQQRLEVLAPKAL
TIPTGQNVTLDYSVENGPVLAAKLQALFGWTETPKVAGGRVPVVIHLLSPAQRPLAVTAD
LASFWQNAYPEVRKDMRGRYPKHPWPDDPLTAQAQQGTKKRPAR
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgcttccaatagaacacatactcccagagctaaaacaaaccctgaaccaaggcaccaca
gccttactgcaggccccgccgggtgccggtaaaacgacaagggtcccgctggctctgttg
gacgccccctggcgggacaaccggaagatcctgatgctggagcccaggcggctggcggcg
cggtcggcggcacggtatatggcgaagcagcttggggaagcgccggggcagacggtgggg
tatcggactcgcctggataccaaagtgtcaggcagcaccaggattgaggtggtgaccgag
ggcattctgacgcgcctgattcagaacgacccgatgttggaagactatgccgctgtgctg
tttgatgagtttcacgagcgctccttgcaagctgatctgggattggcgctggtgcgggaa
agccagcaggccctgcgggaagacctgcgattgctggtgatgtcggccaccctggatacc
gcgcccattgcccgggtgctggggaatgtacctgtaatcaccagcgagggacgggcgttt
ccggtggaggtgttgtaccggcccctgccccgcaatgcccggatggtggaccagatagtg
gcggcggttcatgaggccttgggcgcacagaccggttccatgctggtatttctgcccggg
gccggggagattcgccgggtggcgcagcagctggcgggtcagttgccggataacgtggtg
ctggcgccgttgtatggcaatctcaaagctgaagaacaggatcgggcgatttcgccggca
caggacggtacccgcaagattgtgctggccacagcgattgccgagaccagtctgaccatt
gaaggcgtgcgggtagtggttgatgccggccagcagcgccgggcagtgtttgatcctaac
agcggtatgacgcgcctggtgaccgggcgggtatcgaaggcgtctgcggagcagcgcaag
ggccgggccggtcgtgttgagccgggggtgtgttaccggctttggagtgagtcggagcag
ttcgggttggcggactacacgccgccggaaatccagcaagccgacctggcgccgctggtg
ctggaactggcccagtggggggcccgttccccggagcaggtggtgtggattgatacacca
ccaaaagcgcactggcagcaggcggtggcgttattgcagtggctggatctgctggatgcc
gagggcgccatcaccgaccacggcaaggcggcccgggagctgggtctgcacccgcgcctg
gcccatatggtgatcaaaggccgtgctctggggctgggccagctggcggcagagctggcc
gcgctgctggaggagcgggatttgctcgggccaggctcaggcgctgatttgcctgaacgg
attcgggtgctgcggggggagcgcggtcatcgcggcctggacaccgcacggttgcaggcg
gttcggcaggcggcaaagcgactgtgccgtggccagctggctcaggatctaccctcggaa
accgacgttgggcgggtgttggcccgggcctatccggaccgtattgcccgccgccgctca
ggggccatgcctcggtatcagttgagcaacggcaagggtgcggtgttgcgggaggacgat
cccctggccaggcaggactggctggtggcggcggaactggatggcaaggcccgggaagca
accatctatctggcggcaccggtcgacctcgcagacctggagcaggacttgtctaaccat
attgaagaacgtgaggaagccgtgtgggacgacaaacgcggcaccatcgtagcccgtcgg
gtccgcaagctcggggcactggtgctggcggagaaaccgctgaatcaggtggccccggaa
ctggttcagcagggcctgctggacgcggtgcgccgtaaaggtctggacagcttgccctgg
agcgatgcagcacgccagtgggttgcccgggtgagattactggccggccagtttcccggt
gactggccggagatcagcgaccagtccttgctggacaccctggagacctggttagcgccg
tttatggcgggcatgaagcgctggtctgacctggccggcatcaacctggttcaggccctg
aacgccctgctggattacccgcaacagcagcgactggaagtactggccccgaaagccctg
accattcccaccggccaaaatgtcaccctggattacagcgtggaaaacggccctgtgctg
gcggccaagctgcaggcgttgtttggctggaccgaaacgccgaaagtggcaggtggtcgg
gtgccggtggtgattcaccttttgtcaccggcccagcggcctttagcggtcactgccgac
ctggccagtttctggcaaaacgcctatcccgaggtgcgcaaggacatgcgtggccgctat
cccaaacacccctggcccgacgacccactcaccgcccaggcccagcagggaacgaaaaaa
cgccctgctcgctga
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