Marinobacter alkaliphilus: PBN92_03075
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Entry
PBN92_03075 CDS
T08753
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mall
Marinobacter alkaliphilus
Pathway
mall03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mall00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PBN92_03075 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mall03021
]
PBN92_03075 (rpoC)
03400 DNA repair and recombination proteins [BR:
mall03400
]
PBN92_03075 (rpoC)
Enzymes [BR:
mall01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PBN92_03075 (rpoC)
Transcription machinery [BR:
mall03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PBN92_03075 (rpoC)
DNA repair and recombination proteins [BR:
mall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PBN92_03075 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WBU41894
LinkDB
All DBs
Position
685858..690072
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLLKSQNQSKEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALASVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLNDEQYYEALEEFGDEFDARM
GAEAIKELLEAIDLQAEVDALREEIPQTNSETKIKKFSKRLKILEAFLYSGNKPGDMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEGVVWDILDEVIREHP
ILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERHAALGEGMVFADVKEAHRAYGAG
KVDLQAKVKVRVKEVAYAEDGSKSEAYRVVDTTVGRALLFDIVPDGLPFEIVNRPMVKKA
ISNLINTCYRDAGLKDTVIFADQLMYMGYHYATRSGISIGFNDFEIPPEKYELVDAASDE
VKDIENQYASGLLTQGEKYNKVIDIWSRANDKVSKAMMERLSKEQVIGPDGQPVKGEDGE
DLMQESFNSVYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITANFREGLNVLQY
FISTHGARKGLADTALKTANSGYLTRRLVDVSQDLVVTEEDCGTDEGLLMTPHIEGGDVV
VPLGDRVLGRVTARDVFTPTDKDNAVVPAGTLLDEKTVEMVERAGVDEIWVRSAITCETR
HGICSKCYGRDLARGHRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDNIQ
VKHGGTVRLHNLKSIEKTDGSLVVVSRSSALAIADEQGREREWYKLPYGAVLSVKNGDVV
EAGVVVAKWDPHTHPIIAEAKGTAKFVNMEEGITVRTQADELTGLSTMEVIDPKERPAAG
KDIRPAIQLIDDAGEEVELPGGGTAIFFLPANALVTMANGAKIELGDVVARIPQESSKTR
DITGGLPRVADLFEARRPKESAILAEISGVVSFGKETKGKKRLVITPKDDDAYEVLIPKH
RQLNVFEGETVEKGEVISDGPSNPHDILRLLGVVELAKYITNEIQDVYRLQGVVINDKHI
EVIVRQMLRKVEITDPGDTTLLSGDQVEITQVLEENEKANQADKEPARFERLLLGITKAS
LATESFISAASFQETTRVLTEGAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERRRKR
DLEEQGVTAADVEEALSAELNREG
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctgaatcttctcaagagccagaatcagagcaaggaattcgacgccatc
cgtatcggactggcttcgcctgacatgattcgttcctggtcttttggcgaagtaaaaaag
cctgagaccattaactaccgtaccttcaagccggagcgtgacggtcttttctgtgccaag
attttcggcccgatcaaagactacgagtgcttgtgcggaaaatacaagcgcctgaagcat
cgcggcgttatctgtgaaaagtgcggtgttgaagtcgcactggccagcgtgcgccgtgag
cgtatgggccatatcgagctggccagcccggtcgctcacatctggttcctgaagtcattg
ccgtcccgtatcggcctgatgctggacatgaccctgcgagatatcgagcgggttctgtac
tttgaatccttcatcgttatcgatccgggtatgaccaccctggagaagggccagttgctg
aatgacgagcagtactatgaggccctggaagaattcggtgacgagttcgacgcccgtatg
ggtgccgaggccatcaaagagttgctcgaagctatcgatctgcaggcggaagttgacgcc
ctgcgggaagagatcccccagaccaactccgagaccaagatcaagaaattcagcaagcgc
ctgaaaattcttgaggcgttcctgtactccggtaacaagccgggcgacatggtgatgacc
gttctgccggttctgccacccgatctgcgcccgctggttcccctggacggtggccgtttt
gccacttccgacctgaacgatctgtaccgtcgggtcattaaccggaacaaccgtctcaag
cgcctgctggaactgaacgctccggatatcatcgtgcgcaacgagaagcgtatgctgcag
gaagcggttgacgccctgctggataacggtcgtcgtggtcgggccatcactggcaccaac
aagcgtccgctgaagtctctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgagtcgactactctggccgttccgtgatcgtggtgggtccgtac
ctgcgcctgcaccagtgcggtctgcccaagaagatggccctggagctgttcaagccgttc
attttctccaagcttgagcaccgtggcctggcgaccaccatcaaggccgccaagaaaatg
gtcgagcgcgaggaaggcgtggtctgggatatcctggacgaagtcatccgcgagcacccg
atcctgctgaaccgtgcgcccaccctgcaccgtctgggcatccaggcgttcgagccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtgtgtgcggcttacaacgccgac
ttcgacggtgaccagatggcggtacacgtaccgctgaccctggaagcccagcttgaagcc
cgtgcgttgatgatgtccaccaacaacgtgctgtctccagcgaacggtgagccgatcatc
gtaccgtctcaggacgtggtattgggtctgtattacatgacccgcgagcgccacgctgca
ctgggtgaaggcatggtgtttgctgatgtcaaagaagcccatcgtgcctatggtgccggc
aaggttgacctgcaggcgaaggtcaaggtgcgggttaaggaagtggcctatgccgaagat
ggcagcaagtccgaagcctaccgtgtggttgataccaccgttggccgtgctttgttgttt
gatatcgttcctgacggcctgccgtttgaaatcgtcaaccgtcctatggtcaagaaggcg
atttccaacctgatcaacacctgttatcgggacgctggtctgaaagatactgtcatcttt
gctgaccaactgatgtacatgggttaccactatgcaacccgttccggtatttctatcggc
ttcaacgacttcgagattccgccggagaagtatgagctggttgatgcggcgtctgacgaa
gtaaaagacatcgagaaccagtacgcatccggtctgctgacccagggtgagaagtacaac
aaggtgatcgatatctggtcccgcgccaacgataaagtgtccaaggcgatgatggagcgt
ctgtccaaagagcaggttattggtcctgacggccagcctgtgaagggtgaagacggcgaa
gacctgatgcaggaatccttcaactccgtctacatgatggccgattccggtgcgcggggt
tccgctgcccagattcgtcagttgtccggtatgcgtggtctgatggccaagccggatggc
tccatcatcgaaacgccgattaccgcgaacttccgtgaaggtctgaacgtactccagtac
ttcatctccacccacggtgctcgtaaaggtctggcggatactgcactgaagaccgcgaac
tccggttacctgacccgtcgtctcgttgacgtgtcccaggacctggtggtgaccgaggaa
gactgcggtaccgatgaaggtctgctgatgacgccgcacattgaaggtggcgacgttgtt
gtgccgctgggtgatcgtgttctggggcgtgtgacagcccgtgacgtattcaccccaacc
gacaaggacaacgctgttgttccggccggcactttgctggacgagaaaaccgtcgagatg
gtcgagcgcgccggtgtggatgagatctgggttcgctctgcgattacctgtgagactcgt
cacggcatctgctccaagtgttacggccgcgatcttgcccgtggtcaccgtgttaacgtg
ggtgaggccgtcggtgttatcgctgcccaatccatcggtgagccaggcacccagctgacc
atgcggaccttccacattggtggtgcggccagccgggcctccgccgtggataacattcag
gtcaagcacggcggcacggtacgtctgcacaacctgaagtccatcgagaagaccgatggc
tccctggttgtggtgtcccgttcttcggccctggcgattgccgacgagcagggtcgtgag
cgcgagtggtacaagctgccctacggtgccgttctgtctgtgaagaacggtgacgtggtt
gaggccggcgttgtagttgctaagtgggatccgcacacgcatccgatcatcgccgaagcg
aaaggcacggccaagtttgtcaacatggaagagggcattactgtccgtacccaggctgac
gagctgaccggtctgtccaccatggaagtgattgacccgaaagagcgtcctgctgctggt
aaggacattcgtccggctatccagctgattgacgatgcgggtgaagaagtagaactgcca
ggcggtggtaccgcgatcttcttcctaccggctaacgcgctggtgaccatggctaatggc
gcgaagatcgagctgggtgacgtagttgcccgtattccgcaggaaagctcgaagacccgg
gacatcaccggtggtctgccgcgggttgccgacctgttcgaggctcgtcgcccgaaagag
tctgccatcctggcggaaatcagtggtgtggtgtctttcggtaaagagaccaaaggcaag
aagcgcctggtcatcacgccgaaagatgacgatgcctatgaggttctgattccgaagcat
cgccagctcaacgttttcgaaggtgaaacggttgagaagggtgaggtgatttccgacggt
ccgtccaacccgcacgacatcttgcgtctgctgggtgtggtcgagctggccaagtacatc
accaacgaaatccaggatgtgtaccgcctgcagggtgttgtcatcaacgataaacacatc
gaggttatcgttcggcagatgctgcgcaaggtggaaattaccgatccgggtgataccacc
ctgctgtctggcgaccaggtggaaatcactcaggtgctggaagagaacgaaaaggcgaat
caggcggacaaagagcctgccagattcgagcgtctgctgcttggtattaccaaggcatcg
ctggccaccgaatcgttcatttctgcggcttcgttccaggaaaccacccgggtcctcaca
gaaggtgcggtgaccggtaagcgtgacttcctgcgtggcctgaaagaaaacgttgtggtt
ggccggttgattccggcgggtactggtctggcttaccacagcgaacgtcgtcgcaagcgt
gacctggaagagcagggcgtgaccgcggcagatgttgaagaagctctgagcgcggagctc
aaccgagaaggttga
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