Marinobacter alkaliphilus: PBN92_10105
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Entry
PBN92_10105 CDS
T08753
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mall
Marinobacter alkaliphilus
Pathway
mall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBN92_10105 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mall03019
]
PBN92_10105 (recQ)
03400 DNA repair and recombination proteins [BR:
mall03400
]
PBN92_10105 (recQ)
Enzymes [BR:
mall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PBN92_10105 (recQ)
Messenger RNA biogenesis [BR:
mall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PBN92_10105 (recQ)
DNA repair and recombination proteins [BR:
mall03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PBN92_10105 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WBU39469
LinkDB
All DBs
Position
complement(2227755..2229626)
Genome browser
AA seq
623 aa
AA seq
DB search
MYPDQDFEQLTREPPSSANRSPEQVLHEVFGYESFRLLQGEIVQEVVNGGDALVLMPTGG
GKSLCYQVPALVRPGTAIVISPLIALMQDQVAALRELGVRAAFLNSTMDYEQARATEYAL
MTGELDLLYCAPERLIQPRTIDLLHNASLSLFAIDEAHCVSQWGHDFRSDYLQLSMLAQE
FPGIPRIALTATADERTRKEIAERLSLTNARHFVSGFDRPNIQYRITPKTNANKQLLDFI
EAEHEGDCGIVYCLSRNKVDATAKMLADKGYTALPYHAGLDATARARHQERFLREDGVII
VATIAFGMGIDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGKPSTAWMVYGLQDVIKLRQ
MLEASQGNDQFKRVERQKLDAMLGLCEVTRCRRQVLLRYFGDELEQPCGNCDTCLTPPET
WDGTVAVQKALSCVYRTGQRFGVNYLIDVLRGSENERILQSGHQAISTYGIGTELSANEW
KSVFRQLVANGYLRADPEGYGALQLTEQCRPLLKGEQAIELRKDPVAKKSSSSRSAGKRS
GPAIREQITDQAGWDALRACRKELADKQGVPPYVIFHDTTLFDMLERRPETLEQLAEVSG
VGAAKLEKYGEVFLQTLREIAQS
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtatccggaccaggacttcgagcaactgacccgcgaaccgccttcctccgctaaccgc
agcccggagcaggtactgcatgaggtttttgggtatgagagtttccgcctgctacaggga
gagattgttcaggaagttgtaaatggtggcgatgccctggttctgatgcccaccggcggt
ggtaaatcgctctgttaccaggtgcccgcgctggtccgccccggcacggccattgttatt
tcgcccctgatcgcgctgatgcaggatcaggtggctgcgttgcgggaactcggtgtgaga
gcggcattcctcaactccaccatggattatgagcaggcccgtgccaccgaatacgcattg
atgaccggcgagcttgatctgctctactgcgcaccggaaaggctgatacagccgcgcacc
atcgacctgctgcacaacgcgtcgttatcgttatttgccattgacgaagcccactgtgta
tcccagtggggccatgacttccgctctgattatctccaattgagcatgctcgctcaggaa
ttcccgggtatcccgcggattgccctgacggcaacggcggatgaacgaacccgtaaagag
attgccgagcgtttgtccctgaccaatgcccggcactttgtcagcggttttgatcgccca
aatattcagtatcgtatcactccaaaaacaaatgcaaacaagcagttgttggattttatt
gaagcagaacatgaaggtgattgcgggattgtctattgcctgtcccgcaacaaagtcgac
gccaccgccaagatgctggcggacaaaggctacactgccctgccttaccacgctgggctg
gatgccacagcccgggcacgccatcaggaacggttcctgcgcgaggacggcgttatcatc
gtggcgaccattgctttcgggatgggcattgataaaccagacgttcggtttgtcgcccac
ctggatttacccaaaagcctcgaggcctattaccaggaaaccggccgggctggccgggac
ggcaagccgtccaccgcctggatggtttacggcctgcaggatgtcattaagttgagacag
atgcttgaggcatcgcagggcaacgaccagtttaaacgggtggaacgccagaagctcgat
gccatgcttggcctctgcgaagtgacccgctgccgccgccaggtactgttgcgttatttt
ggtgatgaactggagcagccctgtggtaattgcgatacctgcctcacaccccctgagacc
tgggatggcacggtggccgtgcaaaaggcgctgtcctgtgtgtatcgtaccgggcagcgc
tttggcgttaactacctgattgacgtgctgcgtggctctgagaacgaacgtattcttcaa
tctggacaccaggccatttccacctatggtattggtaccgagttatccgcaaacgagtgg
aaatcggtgttccgtcagctggttgccaacggctacctccgggcagatccggagggctac
ggcgccttacagctcacggaacagtgccgcccgctgctgaagggtgaacaggctatcgag
ttacgcaaagacccggtggccaaaaaatcctcatcgtccagatctgccggcaaacgctcg
ggcccggcaataagggagcagattaccgaccaggccggctgggatgcgttacgggcgtgc
cggaaggaactggcagataaacagggcgtgccgccttacgtgattttccacgacaccacc
ctgttcgatatgctggaacgccgcccggaaaccctggagcaactggcagaggtcagcggc
gtaggggccgccaagctggagaaatatggcgaggtcttcctgcaaaccctgcgggaaatt
gctcagtcctga
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