Mameliella alba: KU6B_25890
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Entry
KU6B_25890 CDS
T06509
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
malu
Mameliella alba
Pathway
malu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
malu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KU6B_25890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
malu03400
]
KU6B_25890 (mfd)
Enzymes [BR:
malu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KU6B_25890 (mfd)
DNA repair and recombination proteins [BR:
malu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KU6B_25890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
AAA_16
MFD_D3
SecA_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
BBU56324
LinkDB
All DBs
Position
2523652..2527131
Genome browser
AA seq
1159 aa
AA seq
DB search
MTEQRIIMGGAPEGFDARLVLREVDKAKGPVIHIARDDKRLAAMRDALAFFAPDMPVVHF
PAWDCLPYDRVSPNADISAARMATLAGLVHGGPSRFVLLTTLSAAMQYLPAREVLREAAF
AARVGDRVDEAGLRAFLVRMGFSQAPTVTEPGDYAVRGGIIDIYPPGDGGPVRLDFFGDV
LDGARRFDPVSQRTTEKLDVVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHAGVEHWLPFFHARLETLFDYLPAAPVLMDDQLTPSRLSRWDSIADQYETRRHAL
SQKKTLGSTVYKPIPPETLYLDDGAWEAALEGKRQVQFHPLPQASGPGVVDAGGRIGRNF
SPERQQENISLFKMLADHVQKCLQDGPVVIASYSEGARERLTGLIEDEGLAEAIPVANGT
RIDKRGLHLAVWSLEAGFVAPWDPAGDKGRLTVISEQDVLGDRLIRQPKKRRKAENFITE
HQSLSPGDLVVHVDHGIGRYLGLEVVTAAGAAHECLTLEYAEGAKLYLPVENIELLSKYG
HDEGLLDKLGGGAWQAKKAKLKQRIREMADRLIRIAAERALRKAPIMDPPAGAYESFAAR
FPYQETDDQLRAIEDVMEDMHSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVIA
PTTLLARQHYNSFAERFRGFPLEVNPLSRFVSSRQAALTRDGISKGTVDIAVGTHALLAK
GIRFNNLGLLIIDEEQRFGVQHKERLKQLRSDIHVLTLTATPIPRTLQLSLTGVRDLSVI
GTPPVDRLSIRTYVSEFDPVTIREALLREHYRGGQSFFVVPRLSDLPEVEEFLKEQVPEV
SYVVAHGQMAAGELDDRMNAFYDGRYDVLLATTIVESGLDIPTANTMVVHRADMFGLSQL
YQIRGRVGRSKTRAYAYLTTKPRAKLTQTAEKRLRVLGSIDTLGAGFSLASQDLDIRGAG
NLLGEEQSGQMRDVGYELYQSMLEEAIAKIRAGEMDGLSEADDQWAPQINLGVPVLIPED
YVPDLDVRLGLYRRLSGLTTKVELEGFAAELIDRFGKLPREVNTLLLVVRIKAMCKKAGI
AKLDGGPKGATIQFHNDKFASPQGLVEFIKAQDGLAKVRDNKIVVRRDWKRDKDKIQGAF
AIARDLAEKVVAEKKKAKA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcagcggatcatcatgggcggcgcgcccgagggctttgacgcccggctggtg
ctgcgcgaggtggacaaggccaaggggccggtcatccatatcgcgcgcgacgacaagcgg
ctggcggccatgcgcgatgcgctggccttctttgcgccggacatgccggtggtgcacttt
ccggcctgggactgcctgccctatgaccgggtttcacccaatgccgacatttctgccgcg
cgcatggcgacgctggcgggtctggtgcatggcggtccgtcgcggttcgtcctgctgacg
acgctctctgcggcgatgcaatacttgcccgcgcgtgaggtgctgcgcgaggcggctttt
gccgcccgtgtcggtgaccgcgtggacgaggcgggcctgcgcgccttcctggtccggatg
gggttcagccaggcgcccacggtgaccgaaccgggcgattacgcggtgcggggcggcatc
atcgacatctacccgccgggcgacggcgggccggtgcggctggatttcttcggggacgtc
ctggacggcgcgcggcggttcgatccggtcagccagcgcacgaccgagaaactggacgtg
gtcgaactggcgccggtgtccgaggtcatcctcgacgaggcggcgatcacgcggttccgg
cagaactaccggatcgaattcggcgcggcgggcaccgacgatccgctctacgaggcggtc
agcgcggggcgcaagcacgcaggcgtcgaacattggctgcccttcttccacgcgcggctg
gaaaccctgttcgattacctgcctgctgcgcccgtactgatggacgatcagctgacgccc
tcgcgcctgtcgcgctgggacagtatcgccgaccagtacgagacacgccgccacgccctg
agccagaaaaagacccttggcagcacggtttacaagccgatcccgcccgagaccctctac
ctggacgatggcgcctgggaagcggcgttggaaggtaagcgtcaggtgcagttccacccg
ctgccgcaggccagcgggccgggcgttgtggatgcgggagggcgcatcgggcgcaatttc
tcgcccgagcgccagcaggaaaacatcagcctcttcaagatgctggccgatcatgttcag
aaatgcctgcaggacgggccggtggtcatcgcttcctactcggagggcgcgcgggagcgt
ctgaccgggttgatcgaggacgagggtctggccgaggcgatccccgttgccaacggcacg
cgaatcgacaagcgcgggctgcacctggcggtctggtcgctggaggcgggctttgtcgcg
ccctgggaccccgcgggcgacaagggacgcctgaccgtcatctcggaacaggacgttctg
ggcgaccggctgatccgacagcccaagaaacgccgcaaggccgagaatttcatcaccgag
caccagtcgctcagccccggcgacctggtggtgcacgtcgatcacggcatcggtcgttac
cttgggctggaggtcgtcaccgccgccggcgccgcgcatgaatgcctgacgctggaatat
gccgaaggggccaagctgtacctgccggtcgagaatatcgagctgctgtccaagtacggc
catgacgaggggctgctggacaagctgggcggcggcgcatggcaggccaagaaggccaag
ctgaaacagcgcatccgcgagatggccgaccgcctgatccggatcgccgccgagcgcgcc
ctgcgcaaggctccgatcatggacccgccggcgggagcctatgaatcctttgccgcgcgc
ttcccctaccaggaaaccgacgatcagctgcgtgccatcgaggacgtgatggaggacatg
cactcgggtcagccgatggaccggctgatctgcggcgacgtggggttcggcaagaccgag
gtcgccatgcgggcggcctttgtcgcggccatgtcgggggtgcaggtagcggtgatcgca
cccacgacgctcttggcgcgccagcactacaacagctttgccgaacggttccggggcttc
ccgctggaggtcaatccgctgtcgcggtttgtctcctcccggcaggcggcgctgacccgc
gacgggatttccaagggcaccgtcgatattgccgtcggcacgcacgcgctgctggccaag
ggcatccggttcaacaacctgggcctgctgatcatcgacgaggaacagcggttcggggtg
cagcacaaggaacggctgaaacagctgcgctcggacatccacgtcctgacgctgaccgcc
acgccgatcccgcgcacgttgcagctgtctttgacgggcgtgcgtgacctgtcggtcatc
ggcacgccgccggtcgaccgcctgtcgatccgcacctatgtgtccgaattcgacccggtg
acgatccgcgaggcgctgttgcgcgagcattaccggggcgggcagagctttttcgtcgtc
ccgcgcctgagcgatcttccggaagtcgaggaattcctgaaggaacaggtgcccgaggtg
tcctacgtcgtcgcacatggccagatggcggcgggcgaattggacgaccgcatgaacgcc
ttttacgacgggcgctatgacgtgctgttggcgacgaccatcgtggaatccggactggat
attcccaccgccaacacgatggtggtgcatcgcgccgacatgttcggcctcagccagctg
taccagatccggggccgcgtgggccggtccaagacccgcgcctatgcctatctgaccacc
aagccgcgggcaaaactgacccagacggcggaaaagcggctgcgtgtgctgggcagcatc
gacaccctgggggcgggcttcagccttgcctcgcaggacctggacattcgcggcgccggg
aacctgctgggcgaggaacagtcgggccagatgcgcgacgtgggttacgagttgtaccag
tcgatgctggaagaggcgattgccaagatccgcgctggcgagatggatggcctgtccgag
gcggacgatcaatgggcgccgcagatcaacctgggcgtgccggtgctgatccccgaggat
tacgtgcccgatctggacgtgcgcctgggcctgtatcgccgcctgtcggggctgaccacc
aaggtggaactggaaggctttgccgccgagctgatcgaccgctttggcaagctgccgcgc
gaggtgaacacactgcttctggtggttcggatcaaggccatgtgcaagaaggccggcatt
gccaagctggacgggggccccaagggcgccacgatccaattccacaacgacaagttcgcc
tcgccccagggactggtcgaattcatcaaggcacaggatggacttgccaaggtgcgcgac
aacaagatcgtggtgcgccgcgactggaaacgcgacaaggacaagatccagggcgccttt
gccattgcgcgtgacctggccgaaaaggttgtcgccgaaaagaagaaggccaaggcctga
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