Mycolicibacterium alvei: MALV_24620
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Entry
MALV_24620 CDS
T06961
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
malv
Mycolicibacterium alvei
Pathway
malv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
malv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MALV_24620 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
malv03021
]
MALV_24620 (rpoC)
03400 DNA repair and recombination proteins [BR:
malv03400
]
MALV_24620 (rpoC)
Enzymes [BR:
malv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MALV_24620 (rpoC)
Transcription machinery [BR:
malv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MALV_24620 (rpoC)
DNA repair and recombination proteins [BR:
malv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MALV_24620 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBX27337
UniProt:
A0A6N4UUI5
LinkDB
All DBs
Position
complement(2507634..2511587)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMAVERKAVEDQRDSDLEARAQKLEAD
LAELEAEGAKSDVRRKVRDGGEREMRQLRDRTQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELQDRYGEYFTGAMGAESIKKLIETFDIEAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQMSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTEVPGDTGEYV
PAAKDRAERGVYSSPAEAIMALDRGALSVRAKIKVRLTQQRPPAALEAELFENGWKPGAA
WTAETTLGRVLFNELLPKGYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKQEILERHEAEAEAIERKYQRGALNHNERNESLVKIWQDA
TEEVGKAMEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGIVVTL
AERGPDGKLIRDAHVETSAFARTLATDAVDEKGTVVIERGHDLGDPAIDALLAAGVTQVK
VRSVLTCASASGVCAKCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARVPRNKAPIADVAGRVQLEESDKFFKITIVPDDGGEEVVYEK
LSKRQRLRVLTHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFETANRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP
AGTGIARYRDIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgttagacgtcaacttcttcgatgaactccgcatcggcctcgccactgcggacgacatc
cgcaactggtccttcggcgaggtcaagaagccggaaaccatcaactaccgcacgctcaag
cctgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgttccgtcccggttgggctacctgctcgacctg
gccccgaaggatctggaaaagatcatctacttcgcggcctacgtcatcaccgcggtcgac
gacgagatgcgccacaacgagctgtccacgctcgaggccgagatggccgtcgagcgcaag
gccgtcgaggatcagcgcgactccgacctggaggcccgggcgcagaagctcgaggccgac
ctggccgagttggaggccgagggtgccaagtccgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgtgagatgcgtcagctccgggaccggacccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagctggctcccaagcagctcatcgtcgacgaggtgctg
taccgcgagctgcaggaccgctacggcgagtacttcaccggtgccatgggcgcggagtcg
atcaagaagctcatcgagaccttcgacatcgaggccgaggccgagtcgctgcgcgacacc
atcaagaacggcaagggccagaagaagctgcgcgccctcaagcgtctgaaggtcgtcgcg
gccttccagatgtcgggtaactccccgctgggcatggtgctcgacgccgtcccggtgatc
ccgccggagctgcgtccgatggttcagctcgacggtggccgtttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagcgactgatcgacctc
ggtgcacccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgtggccggcccgtcaccgggccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccgcttccgtcagaacctgctgggtaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggaacgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcattgccgagcacccggtgctgctgaaccgt
gcacctaccctgcaccgcctgggtatccaggccttcgagccgcagctggtggaaggcaag
gcaatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggcagaggctcaggccgaggcgcgcatcctgatgctg
tcctcgaacaacatcctgtccccggcgtcgggtaagccgctggccatgccgcgtctggac
atggtgaccggcctgtacttcctgaccaccgaggtcccgggcgacaccggcgagtacgtg
cccgccgccaaggatcgtgcggagcggggcgtgtacagctcaccggccgaggcgatcatg
gcgctggaccgcggtgccctgtcggtgcgggccaagatcaaggtgcggttgacgcagcag
cgtccgccggccgccctcgaggccgagctgttcgagaacggttggaagccgggcgctgcc
tggaccgccgagaccacgctgggccgggtgctcttcaacgagctgctgcccaagggctac
ccgttcgtcaacgagcagatgcacaagaaggtccaggcccggatcatcaacgatctggcc
gagcgcttcccgatgatcgtggtggcgcagaccgtcgacaagctgaaggacgccggcttc
cactgggccacccgttcgggtgtcacggtctcgatggccgacgttctggtgccgccgcag
aagcaggagatcctggagcggcacgaggccgaggccgaggcgatcgagcgcaagtaccag
cgcggcgcgctgaaccacaacgagcgcaacgagtcgttggtcaagatctggcaggacgcc
accgaagaggtcggtaaggcgatggaggagttctacccggccgacaacccgatcatcacg
atcgtgaagtccggcgccacgggtaacctcacccagacccgcactctggccggcatgaag
ggcctggtgaccaacccgaagggtgagttcatcccgcgcccgatcaagtcctcgttccgt
gagggcctgacggtgttggagtacttcatcaacacccacggtgcccgtaagggtctggcc
gataccgctctgcgtaccgccgactcgggttacctgacccgccgtctggtggacgtgtcg
caggacgtcatcgtccgcgagaccgattgcgagaccgagcgcggcatcgtcgtcacgctg
gccgagcgcggccccgacggcaagctgatccgcgatgcgcacgtcgagacctcggcgttc
gcccgcaccctggccaccgacgcggtggacgagaagggcaccgtcgtcatcgagcgcggc
catgacctgggcgacccggccatcgacgcgctgttggctgccggggtcacccaggtgaag
gtccgctccgtgctgacctgcgcctcggcctccggtgtgtgtgccaagtgctacggccgc
tcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcccag
tccatcggtgagcccggaacgcagctgaccatgcgtaccttccaccagggtggtgttacc
ggtggcgccgacatcgtcggtggtctgcctcgcgtgcaggagctgttcgaggcccgtgtt
ccgcggaacaaggcgcccatcgccgacgtcgcggggcgggtccagctggaggagagcgac
aagttcttcaagatcaccatcgttcccgacgatggtggcgaggaagtcgtctacgagaag
ctctccaagcgtcagcgactgcgcgtgctcacccacgaggacggctccgaaggcgtgctg
tccgacggtgaccacgtcgaggtcggcgaccagctgatggaaggctccgcggatccgcac
gaggtgctgcgcgtccagggcccccgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtctaccgggcccagggcgtgtcgatccacgacaagcacatcgaggtcatcgtccgg
cagatgctgcgtcgcgtcacgatcatcgattcgggtgcgacagagttcctgcccggctcg
ctgaccgagcgtgccgagttcgagaccgcgaaccgtcgcgtcgtggccgagggcggcgag
cccgcggccggacgtccggtgctgatgggtatcaccaaggcatcgctggccacggattca
tggctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaac
tgccgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccg
gccggtaccggcatcgcccgttaccgcgacatccaggtgcagccgaccgaggaagctcgg
gccgctgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggtcag
gcgaccggtgccgcggtgccgctggacgattacggatacagcgactaccgctag
DBGET
integrated database retrieval system
