Mycolicibacterium alvei: MALV_37040
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Entry
MALV_37040 CDS
T06961
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
malv
Mycolicibacterium alvei
Brite
KEGG Orthology (KO) [BR:
malv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malv03019
]
MALV_37040 (hrpA)
Enzymes [BR:
malv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MALV_37040 (hrpA)
Messenger RNA biogenesis [BR:
malv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MALV_37040 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
NACHT
nSTAND3
NNH7
AAA_30
ABC_tran
SLFN-g3_helicase
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BBX28579
UniProt:
A0A6N4UVY7
LinkDB
All DBs
Position
3845569..3849537
Genome browser
AA seq
1322 aa
AA seq
DB search
MLDVTCTTLSRAPILDRVSEPSVAELRSRLDGLTIRDADRLRRRLRNLRGGDTAKIAQQI
ATAEALVLNRQAAVPTISYPDLPVSQHRDELAKAITENQVVVVAGATGSGKTTQLPKICL
ELGRGIRGTIGHTQPRRLAARTVAQRIADELGTPLGDAVGYTVRFTDQASDSTLIKLMTD
GILLAEIQRDRRLLRYDTLILDEAHERSLNIDFLLGYLRELLPHRPDLKVIVTSATIEPE
RFAAHFSQAPIVEVSGRTYPVEIRYRPLEVPVGGDDDTDDPDDPDHEIVRTPAVGLRASG
SSELRDPTEAIVDAVRELEAEPPGDVLVFLSGEREIRDTAEALKDLRNTEVLPLYARLPT
ADQQKVFQPSRTGRRIVLATNVAETSLTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPI
SQASAAQRAGRSGRTAPGVCIRLYSEADFESRPRYTDPEILRTNLAAVILQMAALQLGDI
AEFPFLDPPDSRSIRDGVQLLQELGAFDAAGALTDVGRRLARLPLDPRVGRMILQADTEG
CVREVLVLAAALSIPDPRERPSDKEDAARQKHARFADEHSDFISYLNLWNYLREQRNQRS
GNAFRRMCREEFLHYLRIREWQDLTGQLRSIARDIGIREGDEPAEPAAIHAALTAGLLSH
VGLREGESREYQGARNSKFVLAPGSVLTRKPPRWIVVADLVETSRLFGRIAAKVEPEAIE
RVAGHLVQRNYSEPHWEAKRGAVVAFERVTLYGLPLVPRRKIGYTEIDPELCRDLFIRHA
LVEGDWQTRHHFFRDNARLRAELEEIEERARRRDLLVGDDDIYTLYDARIPADIVSARHF
DAWWKKQRHKTPDLLTFTRDDLLRSEDGADNPDTWQAGDLALPLTYRFEPGAADDGVTVH
VPVGVLARLGGDGFAWQVPALREELVTALIKSLPKDLRRNFVPAPDTARAILADIDPSAD
SLLDEIQRELRRRSGILVPIDAFDLGKIPDHLRMTFAVESADGKEVARGKDIDALRDQLA
VPVAQAVAEALGGALERTGLRGWPEDLDELPRTVENVSGGHTVRGYPAFVDTGKAVDITV
FANPAEQAAAMRPGLRRLLRLTAASPVKAIERGLSTRTRLALNANPDGSLAALLEDCADA
AADVLVPKPVWTKAEFTGVLARAGKDLGPTTHAAVSRVEKVLAAAHEVQVALPDTPPPGQ
ADAVADIRSQLDRLLPEGFVTATGVTRLNDLTRYVTAIARRLERLPQALGADRDRMGRVH
AVEDAYDDLVTALSAARAEDPKVREIAWQIEELRVSLWAQQLGTPRPVSEQRIYKAIDAV
TR
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
gtgctggatgtgacctgcaccacattgagtcgagcccctatccttgaccgagtgtccgaa
ccgtcagtcgctgagcttcgctctcgcctcgacggtttgacgatccgcgacgccgaccgg
ctgcgccgtcgcctgcgcaatctccgtggcggggacacggccaagatcgcccaacagatc
gcgaccgccgaagccctcgtgctcaaccgccaggccgccgtcccgaccatcagctacccc
gacctgccggtcagccagcaccgcgatgagctggccaaggccatcaccgagaaccaggtg
gtggtggtcgccggcgccacgggctcgggcaagaccacgcagttgcccaagatctgcctg
gagttgggacgcggcatccgcggcaccatcggccacacccagccgcggcggctcgcggcc
cgcacggtcgcgcaacgcatcgccgacgaactcggcaccccgctcggcgatgccgtcggc
tacaccgtgcgtttcaccgaccaggccagcgattccacccttatcaagctgatgaccgac
ggcatcctgctcgccgagattcaacgggaccgccggctactgcgctacgacacactgatc
ctcgacgaggcgcacgagcgcagtctcaacatcgacttcctgctcggctatctgcgcgag
ctgttgccgcaccggcccgacctcaaggtcatcgtcacctcggccaccatcgagccggag
cgcttcgcggcgcacttctcgcaagcccctatcgtggaggtgtcgggtcgtacatatccc
gtcgagatccggtaccggccactggaagtccccgttggcggcgatgacgacaccgacgat
cccgacgaccctgaccacgagatcgtgcgcactccggctgttggtcttcgcgcaagcggc
tcatccgagctacgcgacccgactgaggccatcgtcgacgcggtccgtgaactggaggcc
gaaccgccgggtgacgtactggtgttcctgtctggtgaacgcgagatccgcgacactgca
gaggcattgaaggacctgcgcaacaccgaagtgctcccgctgtacgcgcgactgcccacc
gccgaccagcagaaggtattccagcccagccgcaccgggcggcgaatcgtgttggccacc
aacgtggcggagacctcgctcaccgtgcccggtatccgctacgtcgtcgaccccggcact
gcccgaatctcccgttacagccgccgtaccaaggtgcagcgtctgccgatcgagccgatc
tcgcaggcctcggccgcccagcgggccggacgttccgggcgtaccgcgcccggcgtctgc
atccggctgtactcggaggctgatttcgaatcccgcccccgctacaccgatccggagatc
ctgcggaccaacctggccgccgtcatcctgcagatggccgccctgcagctcggcgatatc
gcggagttccccttcttggacccaccggattcccgcagcatccgcgacggtgtgcagttg
ctgcaggaactcggcgcgttcgatgcggccggcgcgttgaccgacgtcgggcgacgcctg
gcccggttgccgctcgacccgcgcgtcgggcggatgatcctgcaggccgacaccgagggc
tgtgtgcgcgaggtgctggtgctggccgcggcgctgtcgatcccggatccgcgtgagcgc
ccgagcgacaaggaagacgcggcccggcagaagcacgcccggttcgcagacgagcattcc
gatttcatctcctacctcaacctctggaactatctccgcgagcaacgaaaccaacgctcc
ggcaatgccttccgacggatgtgccgcgaggagttcctgcactacctgcggatccgggaa
tggcaggacctgaccggccaactgcgcagcatcgcgcgtgacatcgggatccgcgagggt
gatgagcctgccgagccggccgccatccatgccgcgctgaccgcgggcctgctgtcccac
gtcgggctgcgcgagggagagtcacgcgaatatcaaggtgcccgcaactccaagttcgta
ctcgcgccgggctcggtgctgacgcgcaagcccccgcgctggatcgtggtggccgacctg
gtcgagaccagccggttgttcggccgcatcgccgccaaggtcgaacccgaggcgatcgag
cgggtggccggacatctggtgcaacgcaactacagcgagccgcactgggaggccaaacgc
ggcgcggtggtggcgttcgaacgagtcacgctctacgggctgccgctggttccgcgccgg
aagatcggttacaccgaaatcgatccggagttgtgccgcgatttgttcatccggcacgcg
ctcgtggaaggggactggcagacccgacaccacttcttccgcgacaacgcgcgcctgcgg
gccgaactcgaagagatcgaggagcgggcccgtcggcgtgatctgctcgtcggtgacgac
gacatctacaccctgtatgacgcgcgcatcccggccgacatcgtctccgcccgtcacttc
gacgcctggtggaaaaagcagcggcacaagacacctgacctgctcaccttcacccgggac
gatctgctgcggtccgaggatggtgcggataatcccgacacctggcaggccggcgatctt
gcgttgccattgacataccgcttcgaacccggcgccgccgacgatggcgtcaccgtgcac
gtgccggtgggtgtgctcgcccggctcggcggtgacggcttcgcctggcaggtacccgcc
ctgcgggaggaactcgtcaccgcactgatcaagtcgctgcccaaggatctgcgccgcaat
ttcgtcccggcccccgataccgcgcgggccatcctggccgacatcgatccgtccgcggac
tcactgctggacgaaatacagcgcgaactacgcaggcgcagtggcattctggtgccgatc
gacgcgttcgacctcggcaagatcccggatcatctgcggatgaccttcgccgtggaatcg
gccgacggcaaagaggtggcccggggcaaggacatcgacgcgctgcgcgatcagctggct
gtgcccgtcgcccaggccgtggccgaggcgttgggtggcgccctggaacgcaccggcttg
cggggctggcccgaggacctcgacgagctgccgcggacggtggagaacgtgagcggcggg
cacaccgtccgcggatacccggccttcgtggataccgggaaggccgtcgacatcacggtc
ttcgccaacccggccgaacaagccgcggccatgcgcccgggtctgcgccggctgctgcgg
ctgaccgcggcgtcaccggtcaaggcgatcgaacggggcttgagtacccggacgcgcctg
gcgctcaacgccaatcccgacggttcgctggcggctctgctcgaggattgcgccgacgcc
gccgccgatgtgctggttcccaaaccggtgtggacgaaggccgaattcaccggtgtcctg
gcccgggccggcaaggatctcggccccaccacccacgctgccgtcagccgcgtcgagaag
gtgctggccgccgcccacgaagtgcaggtcgcgttgcccgacacgccgccacccggccag
gccgacgcggtcgcggacatccgatcgcaactggatcgattgctgcccgagggctttgtc
actgcgaccggcgtcacccggctgaacgacctgacccggtatgtcaccgcgattgcccgc
cgattggagcggttgccgcaggcgctcggtgccgaccgcgaccggatgggccgggtgcat
gccgtggaggacgcctacgacgacctggtgaccgccctgtcggcagcgcgggccgaggac
ccgaaggtgcgtgaaatcgcctggcagatcgaggagttgcgggtgagcctgtgggcacag
cagctcggcacgccccggccggtcagtgagcagcgcatctacaaggcgatcgacgccgtc
acgcggtag
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