Mycolicibacterium alvei: MALV_47200
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Entry
MALV_47200 CDS
T06961
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
malv
Mycolicibacterium alvei
Pathway
malv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
malv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MALV_47200 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
malv03400
]
MALV_47200 (mfd)
Enzymes [BR:
malv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MALV_47200 (mfd)
DNA repair and recombination proteins [BR:
malv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MALV_47200 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BBX29595
UniProt:
A0A6N4V014
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All DBs
Position
4889814..4893452
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AA seq
1212 aa
AA seq
DB search
MTAPGYNHVQTPIAGLVELALTDPSLQDVFRRAVDRPADLALVGPASARVLVAAGLAQQG
PLLVVTATGREADDLTAELRGVFGDAVALFPSWETLPHERLSPGVETVGARLLLLRRLAH
PDDETLGPPLRVVVTTTRSLLQPMAPDVVSTEPVTLAVGAEAEFEGVVARLVDLAYTRVD
MVGKRGEFAVRGGILDIFPPTAEHPVRVEFWGDEISEIRMFAIADQRSIPEIPVQNVVAV
PCRELLMTAEVRERAAVLSQEHPTHENSVPGSVPEMLAKLAEGIPVDGMEALLPLLHSVQ
PTTLTHHLPEGAPVLLCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGDAPIDIEALGAS
GFVPFAQAREDAVAGGHPWWTLSQLPDGKATELDLRPSPSARSQQSLDEIFAMLRAHVAT
GGYAAVVTPGAGTAQRVVEQLGESDTPAAVLDPGVAPKAGVVGVLKGPMHDGVVLPGANL
VIITETDLTGNRVTSSEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG
ARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKARK
AVREIASELVALYAKRQSAPGHAFGPDTPWQNEMEDAFGFTETIDQMTAITEVKSDMEKP
VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPVT
VKGLSRFTDPAESRTTLAGMKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEHK
EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGPHDDKQVA
AALRRELLRDGQVFYIHNRVRTIDQAAARIRQMVPEARVVVAHGQMNEEALEKTVEGFWN
REYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYMLYPPN
SPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLV
GEAVEAYRAVADGKTVATPQETKEVRVDLPVDAHLPPEYIGSDRLRLEGYRRLAAASDED
AVRAVVDELVDRYGPLPVEVQRLVAVARLRLLCREYGITEIGAVSASTIKLSPLVLPDSA
QLRLKRMYPGAHYRATTSVVQVPIPRESDSIGSPRIRDLDIVQMVAGLVLVLHGKGQSDV
DITKFSQVTGEV
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggtacaaccatgtccagaccccgattgcgggtctcgttgagctggca
ttaaccgatccgtcgctgcaggacgtttttcgccgtgccgtcgaccggcccgcagatctc
gcactcgtcggcccggccagcgcccgcgtgctggtcgccgccggactggcccagcagggg
ccgttgctggtggtcaccgccaccggccgggaagccgacgatctgaccgccgagttgcgc
ggcgtcttcggtgacgcggtcgcgctgttcccgtcctgggagacgctgccgcacgagcgc
ctgtcgccgggcgtggaaacggtcggcgcccggttgttgctgttgcgccggctcgctcat
cccgacgacgagacgctgggcccgccactgcgggtggtggtcaccaccacccgatccctt
ttgcaaccgatggcccccgacgtggtgagtaccgaaccggtcaccctcgcagtcggcgcg
gaggccgagttcgagggcgtggtcgcgcgcctggtcgacctcgcgtacacccgcgtcgac
atggtcggtaaacgcggggagttcgccgtccgcggcggcatcctcgacatcttcccgccc
actgcggagcacccggtacgcgtggagttctggggcgacgagatctccgagatacggatg
ttcgcgatcgccgaccagcgttcgatccccgagattccggtgcagaacgtggtcgctgtg
ccgtgccgtgaactattgatgaccgccgaggtgcgtgagcgcgccgcggtgctctctcaa
gaacaccccacccacgagaacagcgtgccgggcagcgtgcccgagatgctggccaagctc
gccgagggaatcccggtcgacggcatggaggcgctgctaccgctgttgcattcggtgcag
cccacgacgctgacacaccacctgcccgagggcgccccggtgttgttgtgcgatccggag
aaggtgcgcacccgggcgggcgacctgatcaagaccgggcgggaattcctggaggcctcg
tggtcgacggccgcggtcggcggggatgcccccatcgacatcgaggcgctgggggcatcc
gggttcgtcccgttcgcgcaggcgcgagaagacgccgtcgccggcggacacccgtggtgg
accctgagccagctgcccgacggcaaggccaccgaactcgacctgcggccgtcgccctcg
gcgcgtagtcagcagagcctcgacgagatcttcgcgatgctgcgtgcccacgtggccacc
ggtggatacgctgcggtggtcaccccgggtgccggaactgcgcaacgcgtggtggagcag
ctcggcgaatcagacacgcccgcagcagtattggatccgggagtcgcgcccaaagccggt
gtggtcggcgtgctcaagggtccgatgcacgacggtgtggtgctgccgggggccaacctc
gtcatcatcaccgagaccgatctgaccggcaaccgggtgacgtcctcggaaggcaaaagg
cttgcggccaagcggcgtaacgtcgtcgacccgctggcgctgaccgccggcgatctcgtg
gtgcacgatcagcacggcatcggcaagttcgtcgagatgaccgagcgggtggtcggcgga
gcgcgccgcgagtacctggttctggagtacgcctcggccaagcggggcggcggatcggat
cgcctctacgtgccgatggattcgctggaccagctgtcgcggtacgtgggcggcgaagcg
ccatcgctctccaagctcggcggtagcgattgggccaacacgaaaaccaaggcacgcaag
gcagttcgggagatcgccagcgaactggtggcgctgtacgccaaacgtcagtcggcgccc
gggcatgcgttcggccccgacactccatggcagaacgagatggaagatgcgttcggtttc
accgagaccatcgaccagatgaccgccatcaccgaggtcaaatccgatatggagaaaccg
gttccgatggaccgggtgatctgtggtgacgtgggctacggcaagaccgagatcgcggtg
cgggcggcgttcaaggccgtccaagacggcaaacaggtcgcggtgctggtgccgacgacg
ctgctggccgatcagcatctgcagaccttcaccaaccggatggcgggtttcccggtgacg
gtcaaggggttgtcgcggttcaccgatcccgcggagtcacgcaccacgttggcgggcatg
aaggacgggtcggtcgacgtggtgatcgggacgcaccggctattgcagaccggtgtgacc
tggaaagacctgggcctcatcatcgttgacgaggaacagcggttcggcgtcgagcacaaa
gagcacatcaagtcgatgcgcacccacgtcgacgtgctcaccatgagtgccacgccgatc
ccgcgcaccctggagatgagcctggccggtatccgcgagatgtcgacgatcctcaccccg
cccgaggagcgtcacccggtgctgacctatgtcgggccgcacgacgacaagcaggtggcc
gcggcgttgcgccgcgagttgctgcgcgacgggcaggtgttctacatccacaaccgggtc
cgcacgatcgaccaggccgcggcgcggattcgtcagatggtgcccgaagccagggtcgtt
gtggcgcacgggcagatgaacgaggaggcgctggagaagaccgtcgagggcttctggaac
cgtgagtacgacatcctggtctgcaccacgatcgtcgagaccggcctggacatctcgaac
gccaacacgctgatcgtcgagcgggccgacaccttcgggttgtcgcagctgcatcagctg
cggggccgggtggggcgcagccgtgaacgcggatacgcctacatgctctatccacccaat
tcgccgctgaccgagaccgcctacgaccggctggccacgatcgcccagaacaacgagctg
ggtgccggtatggccgtggccatgaaggacctggagatccgcggtgcgggcaacgtactg
ggcgccgagcagtccggccatgtggcgggggtgggtttcgacctctacgtgcggctggtc
ggagaggccgtagaggcctaccgggccgtcgcggacggaaaaaccgttgccacgccacaa
gaaacgaaagaagtacgggtcgacctgccggtcgatgcgcacctgccgccggaatacatc
ggcagtgaccggttgcggctcgagggctaccggcggttggccgccgcttcggatgaagac
gcggtgcgagccgtcgtggacgaactcgtcgacaggtacggtccgcttccggtcgaggtg
cagcgcctggtcgcggtggcgcggctacggttgctgtgccgggagtacggcatcaccgag
atcggcgcggtgtcggcgtcgacgatcaagctgtcaccgctggtgctgcccgattccgcg
cagttgcggctcaagcggatgtacccgggggcgcactaccgcgccaccacctcggtggtt
caggtgccgatcccacgcgagagcgacagcatcggctcgccgcggatacgcgacctcgac
attgtccaaatggttgccggtctggtgctggttctccatggcaaaggccagtcagatgtt
gatataacgaagttctcgcaggtaactggggaggtgtga
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