Mycolicibacterium alvei: MALV_50940
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Entry
MALV_50940 CDS
T06961
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
malv
Mycolicibacterium alvei
Pathway
malv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
malv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MALV_50940 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
malv03021
]
MALV_50940 (rho)
03019 Messenger RNA biogenesis [BR:
malv03019
]
MALV_50940 (rho)
Transcription machinery [BR:
malv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MALV_50940 (rho)
Messenger RNA biogenesis [BR:
malv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MALV_50940 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
AAA_22
VWA_2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BBX29969
UniProt:
A0A6N4UZS8
LinkDB
All DBs
Position
5270833..5272860
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AA seq
675 aa
AA seq
DB search
MTDTDLFTADSANGAGDSPKAVTTESTATADTAAPAAASAPGSGTARRASSARPASLSTM
VLPELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGVTAETKPAAAETKPAAADVQPD
AGAETAEPPAARRRERRGSSRQAGSPAADAAAETKVEAEADSAAEADTKGTESAAEPQEK
PAKRDRQDRRDKREQSDSDKADNKADNKTENKQDDKRDQKQDRGQARDQSDQQDNQQNRG
GNSSSNADDDGDGDGRQGRRGRRFRDRDRRRRGDRGTEGGGNETELREDDVVQPVAGILD
VLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVPREGENSGGGQNPRQK
FNPLVRLDSVNGGPVEAAKNRPDFTKLTPLYPNQRLRLETTPERLTTRVIDLIMPIGKGQ
RALIVSPPKAGKTTIMQDIANAITQNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTF
DRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDST
ALYPPKRFLGAARNIEFGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAER
RVFPAVDVNPSGTRKDELLLSKEEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEF
LVQVSKTAPGSMDAD
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatacggacctcttcacggctgacagcgccaacggcgcgggggattcgccgaaa
gccgtgactactgaaagcactgcgaccgctgacactgcggcgccggctgctgcctctgcg
cccggatcaggcaccgcgcggcgcgcttcgagcgcccggcccgcgtcgctgtcgaccatg
gtgctgcctgagctgcgagcgctggccaaggaaatcggtgtcgaaggcgcgtccggtttg
cgtaagagcgagctgattgcagctattcgcgcccaccgtggcgaatccaacggcgtcacc
gccgagaccaagccggctgccgccgaaaccaaaccggctgccgccgatgtccagccggac
gccggtgccgagaccgccgagccgcccgcggcccggcgccgtgagcgccgaggttcctcg
cgccaggccggctcgccggccgccgacgcagccgccgagaccaaggttgaggcggaggcc
gattcggccgccgaggccgacaccaagggcactgagtctgccgctgagccgcaggaaaag
ccggccaagcgtgaccgccaggaccgacgcgacaagcgcgagcagtccgattcggacaag
gccgacaacaaggctgacaacaagaccgagaacaagcaggacgacaagcgcgaccagaag
caggaccgcggtcaggctcgcgaccagtccgatcagcaggacaaccagcagaaccggggc
ggaaactcgtcctccaacgccgatgacgatggagatggcgacggtcgccagggccgccgt
ggccgccggttccgtgaccgtgaccgtcgtcgccgtggcgaccgcggcaccgagggtggc
ggtaacgagaccgagctgcgcgaggacgacgtcgtccagccggtcgccggcatcctcgac
gtcctggacaactacgcattcgttcgtacctcgggctacctggccgggccgaatgatgtc
tacgtctcgatgaacatggtgcgcaagaacggtctgcgccgtggtgacgcggtcaccggt
gcggtccgcgtgccccgtgagggcgagaacagtggcggcgggcagaacccgcggcagaag
ttcaacccgctggtgcgtttggacagcgtcaacggcggtccggtcgaggcggccaagaac
cggccggacttcaccaagctgaccccgttgtacccgaaccagcggctgcgcctggagacc
acgcccgagcggctgaccacccgcgtgatcgacctgatcatgccgatcggtaagggacag
cgtgccctgatcgtgtcgccgcccaaggccggtaagaccacgatcatgcaggacatcgcc
aacgcgatcacccagaataatccggaatgccacctcatggtggtgctcgtcgacgagcgc
cccgaagaggtcaccgatatgcagcgttcggtgaagggcgaggtcatcgcctcgacgttc
gaccgtccgccgtcagatcacacgcaggccgccgagctggcgatcgaacgggccaagcgc
ctggtcgagcagggcaaggacgtcgtggtgctgctggactcgatcacccgtctgggccgc
gcgtacaacaacgcgtccccggcctcgggtcgcatcctgtccggtggtgtggactccacc
gccctgtacccgccgaagcggttcctcggcgcggcccgcaacatcgaattcggtggctcg
ctgacgatcatcgccaccgcgatggtcgagaccggctccaccggtgacacggtgatcttc
gaggagttcaagggcaccggcaacgccgagctcaagctcgatcgcaagatcgccgagcgc
cgggtgttcccggcggtcgacgtcaacccgtcgggcacccgcaaggacgagctgctgctg
tccaaggaggagttcgcgatcgtgcacaagctgcgccgcgtgctctcgggtctcgacagc
caccaggccatcgatctgctgatgagccagctgcgcaagaccaagaccaactacgagttc
ctggtgcaggtctccaagaccgccccgggctcgatggacgccgactaa
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