Candidatus Mycosynbacter amalyticus: GII36_02470
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Entry
GII36_02470 CDS
T08481
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mama
Candidatus Mycosynbacter amalyticus
Pathway
mama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII36_02470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mama03019
]
GII36_02470
Enzymes [BR:
mama01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GII36_02470
Messenger RNA biogenesis [BR:
mama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GII36_02470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Utp25_C
CMS1
AAA_22
AAA_30
Cas3-like_C_2
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
QHN42710
UniProt:
A0A857MPX7
LinkDB
All DBs
Position
448459..449688
Genome browser
AA seq
409 aa
AA seq
DB search
MPYKTHGSGRPQRSASSFRRGRPQGGGRSGGARKKGPQKQYIHPSKFVNKAVTKEAEAPY
EPKHVFADFPFGAELHANIRAKGFEKPSAIQDQAIPEIIAGKDVIGLANTGTGKTAAFLL
PIIERMSGIMLRPSVLIVAPTRELAQQIDEEFRAFARGMGLYSALIVGGVNVDRQLRDLK
RRPHFIIGTPGRLKDLIERRHLQMKNMGVLVLDEADRMLDMGFLPDIRRIVSEMPKERQS
LFFSATITPDIEALVHDFLTDPVTVSVRTTETSDHVEQDVIEARDKAHKIELLGELLAQD
GYDKVLVFGETKFGVQRLSDHLSNAGHPSVAIHGNKNQSQRQRALKQFKDEKVKVMVATD
VAARGLDIPNVTHVINFDTPQTYSDYVHRIGRTGRGGAHGRAHTFIDQQ
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgccatacaaaactcatggttctggccgcccacagcgtagcgccagcagtttccgacgt
ggacgcccgcaaggtggtggtcggagcggtggtgcccgtaagaagggtccacagaagcaa
tacatccacccatcgaaattcgtcaacaaagccgtaacgaaagaagccgaagcgccctac
gagccgaagcatgtcttcgcggacttcccttttggtgctgaactccacgcgaatattcgt
gccaaaggcttcgaaaaaccaagcgcgattcaggatcaggccatcccagaaatcattgcc
ggcaaagacgtgattggtctcgccaacaccggtaccggtaaaactgctgcgttcctgctg
cctattattgagcgcatgagcggcatcatgctccgcccgagtgtgctcattgtagcaccg
actcgcgagcttgctcagcagatcgacgaagaatttcgcgcgtttgctcgtggcatgggg
ctctattctgcgctcatcgtaggtggcgtcaatgttgatcgccagctacgtgatctcaag
cgtcgtccacatttcatcatcggtaccccaggtcgtctcaaagatttgatcgaacgccgc
catctccagatgaaaaacatgggggtgctcgtcctcgacgaagccgaccgcatgctcgac
atgggctttttgccagacatccgccgtattgtgagtgagatgccaaaggaacgccagagt
ctcttcttctcggcgactattaccccggatatcgaagcactggtgcacgatttcctgact
gatcctgtaactgtgagcgtccgcacaaccgagacaagcgatcatgtggagcaagatgtt
atcgaagcgcgcgacaaagcgcacaagatcgagctgctcggagaactgctggctcaggat
ggctacgacaaagtacttgtgttcggcgagaccaagtttggtgtgcagcgcctcagcgat
cacctttcgaacgctggccacccgtctgtggcgattcacggcaacaaaaaccagtcgcag
cgtcagcgtgcgctgaagcagttcaaggacgagaaggtcaaagtcatggtagcgacagac
gtcgcggcgcgcggtctcgatattccgaacgtcacacatgtgattaacttcgatacgccg
caaacttatagcgactatgtgcatcggattggtcgtaccggccgcggcggcgcgcatggt
cgagcacatacatttatcgatcagcagtag
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