Megalobrama amblycephala (Wuchang bream): 125243008
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Entry
125243008 CDS
T08212
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125243008 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamb03021
]
125243008 (smarcc1a)
03036 Chromosome and associated proteins [BR:
mamb03036
]
125243008 (smarcc1a)
Transcription machinery [BR:
mamb03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125243008 (smarcc1a)
Chromosome and associated proteins [BR:
mamb03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125243008 (smarcc1a)
PBAF complex
125243008 (smarcc1a)
GBAF(ncBAF) complex
125243008 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT_2
BRCT
Motif
Other DBs
NCBI-GeneID:
125243008
NCBI-ProteinID:
XP_048008154
LinkDB
All DBs
Position
LG13:33001856..33027275
Genome browser
AA seq
1098 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQAGAGSSIGRKKDGGPSSKFWESSETVSQLETVRLWIGKHY
KKYVQTDSPTSKTLAALVVQLLQFQEDAFGRRVSNPALTKLPAKIFLDFKPGGALCHILG
SAYKFKSEQGWRRFDLQNPSRMDRNLEMFMTIEKTLVQNNSLTRPIVYIVSDVEQKQANK
LKDIIKRHQGTITEDKSKATHIIYPSPAQLEEEEWLRPVMRKDKQVLVHWGNYPDSYDTW
VSTSDVDGDVEDPPSSEKPWRVHAKWVIDTDAFNEWMNEEDYEVDENKKSVSFRQRIFPG
EEVSSRTPDRKDRKSLVGGKKRRRSPSPPSTPAESRKKGKKGNPGGQWRRRGHQNDDEQD
EDLTKDLEDPSPVPGMEEVTLPKNVNQKKDSENTPVKGGTVADLDDHEDDSVASGGKEDD
EQGKTEINRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAESRP
LPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPSDLQNFGLRTDI
YSKKNPKGKGAAGGRDWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVR
EEVPTELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTEPTETEKMETDSD
SQQPDKAEAKDEAEKPSESAEKPTEAEKEKNETTEKSEPQEEEESEGGEPKTAEKDKEED
METTEEGKEGEEEQEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAVEERKIKSLV
ALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQ
QMEQQAAAQQNAGGHHGPPPHGPPPGMHPGHPGHPGHPGPGYPPMHHAMGPHHAPQTGPM
VGPGQPMPGQPMSGRMMPGPPPVGPPQGGMPPMMGPRHPGPPNGMYPGPPPPTAQPDGMP
PGPVGPPAPAPPPRAAEN
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatcggccggccaa
gcgggagccggttcctcaattggacggaaaaaagacggagggccgtcttccaagttttgg
gagagctcggaaacggtctctcagttggagacagttcggctgtggatcggaaaacattat
aagaagtatgtccaaaccgactctcctacaagcaaaactttggctgcgctggtggtgcag
ttgctgcagtttcaggaggatgcatttgggcgtagggtcagcaatcctgcccttaccaag
ctacctgcaaagatctttctggactttaaacctggaggagccctttgccacattctgggt
tctgcatacaagttcaaaagcgagcagggctggaggaggtttgatctgcagaacccatcc
agaatggatagaaatttggagatgtttatgactattgagaagactcttgttcagaacaac
tctttgacccgaccaattgtgtacattgtgtctgacgtagagcaaaagcaagccaataag
ctcaaagacatcattaaaagacatcagggaaccatcactgaagataagtcaaaggccact
catattatttacccctctccagctcagctggaagaagaggaatggctgcgtcctgtaatg
cgcaaagacaagcaggtgctggttcactggggcaactaccctgacagttatgacacatgg
gtatcaacaagtgatgtggatggagatgttgaggatccaccaagttctgagaaaccatgg
agggtgcatgctaaatgggtcatcgacacagatgctttcaacgagtggatgaatgaggaa
gattatgaagtggatgagaacaagaagtctgtgagtttccgccagcggatctttccaggg
gaagaagtgtcttcccgtacacccgatcgcaaggaccgcaagtccctggttggcggcaag
aagaggagacgctctccatccccacccagcacccctgcggagtctcgaaaaaagggcaag
aaagggaatcctggaggacagtggaggcgccgtggacatcaaaatgatgacgagcaggac
gaagacctcacaaaggacctggaagatccttcccctgtgccaggaatggaagaagttaca
ttgccaaaaaatgtcaatcagaaaaaggacagtgagaacacaccagtgaagggtggaact
gttgcagatttggatgaccatgaagatgattcagtagcatctggtggcaaggaggatgat
gaacagggcaaaacagagatcaatcgtctgatcgactctgaggataacgtgactgagcaa
acccatcacatcattatccccagctatgctgcctggtttgactacaacagtatacacgaa
attgagagacgtgccctgccagagttcttcaatggcaaaaacaaatctaagactccagag
atatatctggcttatcgtaacttcatgattgacacataccggctgaatcctcaggagtac
ctgacctccacctcctgcaggaggaacctcactggagatgtgtgtgcggtcatgagagtg
catgccttcttggagcagtgggggctggtaaactaccaggttgatgctgagagcagaccc
ctaccaatgggccctccaccaaccccacatttcaacgttcttgctgatactccctctggt
ttggtgccgctgcaccaccgccccccacaggttccccctgctcagcagatgctgaacttc
ccagaaaagggcaaagacaagccaagtgacttgcagaactttggcctccgtacagatatt
tactcaaagaagaatcccaagggtaaaggggctgcaggtggcagagactggactgagcaa
gaaacgttacttctgttggaggctctggagatgtataaggatgactggaataaggtttcg
gagcatgttggaagtcgtacacaagatgagtgcatcttgcacttcctgcggcttcccata
gaagatcaatacctggagagctcggaagcctcgctaggccctctagcttaccagcccatc
cccttcagccaatcaggaaatcctgtcatgagcactgttgcgttccttgcctctgtagtc
gacccacgtgtggcggcagctgctgccaaagcagctctggaggagttctcccgtgtgcgt
gaggaggttcccacggagctggtggaggctcatgtgaagaaggtgcaggaggccgcacgc
agcacaggaaaagtggaccctgcgttcggcctggagagcagtggcattgctggcacagcc
cctgaggagccagagaaaacagaacctacagagactgagaagatggaaacagactcagac
tcccagcagcctgataaggcggaggcgaaggatgaagctgagaagcccagtgagtctgca
gaaaagcctacagaggcagagaaggaaaagaatgagacaacagagaaatctgagccacag
gaagaggaagagagtgaggggggagaacccaagacagcagagaaagacaaagaagaggac
atggagaccacagaggaagggaaggagggtgaggaggagcaggaggaaggaaagaaaaag
cttgagttggatattggagagggcaacattgccactgctgccgctgctgctctggcctct
gctgccaccaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctcttgtg
gctctgctggtagaaactcagatgaaaaagctggagatcaaactccgacactttgaggag
ctggagaccatcatggaccgtgagaaggaagccctggagctccagaggcagcagcttttg
acagaacgacaggcgttccacatggagcagctgaagtacgcagagatgaaggctcgtcag
cagatggagcagcaggcagctgcacagcagaacgcaggaggacatcatggacctcctcca
catggcccacctccaggcatgcaccctggacacccaggacatcccgggcaccccggcccc
ggatatccccccatgcatcacgccatgggtccccaccatgcccctcagacaggaccaatg
gttggaccaggtcagcccatgccaggtcaaccaatgtcaggccgaatgatgcctggacct
cccccagttggacccccacaaggtggcatgccccccatgatgggacctcgacaccctgga
ccaccaaacggcatgtacccaggtcctcctcctccaaccgcacagcctgatgggatgccc
cctggcccagtgggacctcctgcacctgcgccccctcctcgtgctgctgaaaactaa
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