Megalobrama amblycephala (Wuchang bream): 125243140
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Entry
125243140 CDS
T08212
Symbol
pabpc1a
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03015
mRNA surveillance pathway
mamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125243140 (pabpc1a)
09123 Folding, sorting and degradation
03018 RNA degradation
125243140 (pabpc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125243140 (pabpc1a)
03041 Spliceosome [BR:
mamb03041
]
125243140 (pabpc1a)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125243140 (pabpc1a)
mRNA cycle factors
Stress granule specific factors
125243140 (pabpc1a)
Spliceosome [BR:
mamb03041
]
Complex C
Other components
Complex C specific factors
125243140 (pabpc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_Nup35
RRM_3
PABC_AtC3H46
POP1_C
Motif
Other DBs
NCBI-GeneID:
125243140
NCBI-ProteinID:
XP_048008478
LinkDB
All DBs
Position
LG13:complement(37304324..37311497)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAKEFTNVYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQNMPNAIRPSAPRPQTFGAVRPASSQVPRMMAS
QRMASQAMGPRPTAAGAATGTAQVRGVPQYKYAPGVRNPQQHMPTQPQVPMQQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPE
SLRSKVDEAVAVLQAHQAKEAAQKSVTSTAVPAV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagttacccgatggcctccctgtatgtgggtgatctacaccag
gatgtcaccgaggccatgctgtacgagaagttcagcccggctgggcccattttgtccatt
cgggtgtgcagagacatgatgacccgccgctctctcggttacgcctacgtgaacttccag
cagcccgctgatgctgagcgtgccttggacacaatgaactttgatgtgatcaagggacga
cccgtccgcatcatgtggtcccagcgagacccctcactgcgtaagagtggtgttggcaac
atcttcatcaagaacctggacaagtcgatcgacaacaaggccctttatgacacattctct
gccttcggaaacatcctctcctgcaaggtggtttgcgatgagaacggctctaaaggatac
gggtttgtgcactttgagacccatgaggccgcagaaagagccattgagaaaatgaacggc
atgttgctcaatgaccgcaaagtgttcgtcggtcgcttcaagtctcgcaaggagcgtgag
gctgagatgggcgcccgtgccaaagaattcaccaacgtttacatcaagaactttggagag
gatatggatgacgagaagctgaaggagatcttcagcaaatatggtccagctctgagcatt
cgcgtcatgaccgatgagagcggcaaatctaaaggctttggctttgtcagctttgagagg
catgaggacgcccagagggctgtggatgagatgaatggaaaagagatgaacgggaagcag
gtttacgtgggtcgtgcgcagaagaagggcgaacgtcagacagagctcaagcgcaagttt
gagcaaatgaagcaggaccgcatgactcgctaccagggagtcaatctctacgtgaaaaat
ctggatgatggtttggatgacgagcgcctgcgtaaagaattctcaccatttggcaccatt
accagtgcaaaggtgatgatggaaggtggccgcagtaagggttttgggttcgtctgcttc
tcttcccctgaagaagccactaaggctgtgacagaaatgaacggccgcatcgtcgccacg
aagcccctgtacgtcgcgctggcccagcggaaggaagagcgccaggcgcaccttaccagc
cagtacatgcagaggatggccagtgtcagagccgtaccgaaccctgtcctcaacccctac
cagcccgcaccaccatctggatacttcatggcagccattccacaggctcagaatcgcgcc
gcgtactatcccaccagtcagctcgcacagctccgccccagtcctcgctgggccactcag
ggtgtccgccctcagcatttccagaatatgcccaacgctatcaggccatctgcaccccgt
ccacaaaccttcggtgccgtacgtcccgcctcctcccaggtcccccgtatgatggcctct
cagcgcatggcgtctcaggcgatgggtcctcgtcctactgccgcaggtgccgccacgggt
accgctcaggtgagaggagtgccacagtacaagtatgctcccggagtccgcaatccacag
cagcacatgcccactcagccgcaggttcccatgcagcagcctgctgtccatgttcaaggt
caggagcctctgaccgcgtccatgttggctgccgcccctccacaagaacagaagcagatg
ctgggtgagcgtctgttcccgctcatccagaacatgcaccccagtctggctggaaagatc
actggtatgctgttggagatcgacaattctgagctgctccacatgctggagtctccggag
tctctgaggtcaaaggtggatgaagcagtagcggtgctgcaggctcatcaggccaaggaa
gccgcccagaaatcagtcaccagcactgctgtgccggctgtctaa
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