Megalobrama amblycephala (Wuchang bream): 125244353
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Entry
125244353 CDS
T08212
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mamb03016
]
125244353 (rtcb)
Enzymes [BR:
mamb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125244353 (rtcb)
Transfer RNA biogenesis [BR:
mamb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125244353 (rtcb)
Prokaryotic type
tRNA splicing ligases
125244353 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
125244353
NCBI-ProteinID:
XP_048010393
LinkDB
All DBs
Position
LG14:complement(970650..978676)
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AA seq
505 aa
AA seq
DB search
MSRTYNDELQYLDKIHKNCWRIKKGFVPNMQVEGIFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMENPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttataacgatgagcttcagtatctggataaaatccacaaaaactgctgg
cggatcaagaaaggtttcgtgcctaacatgcaggtggagggtattttctatgtcaacgat
cctctggagaaactgatgtttgaggagctgagaaacgcctgtcgtggtggagggtttggt
ggtttcttacctgctatgaagcaaattggaaacgtcgccgccctgccgggaatcgtgcat
aggtctattggcttacccgacgtccactctggatatggttttgccatcggaaacatggct
gcatttgacatggaaaacccggatgccgtggtctctcccggtggtgtcgggtttgacatc
aactgtggcgtgagactgctgcggacgaacctggatgagggcgacgtgcagccggtgaag
gagcagctggcgcagtccatgtttgaccacattcccgtcggagtcggatccaagggcgtc
attccgatgggagcaaaagatctggaggaagctctggagatgggtgtggattggtctctg
agggaaggatacgcctgggccgaggataaggaacactgtgaggaatacggccgaatgctg
caggccgatcccaacaaagtctcgtccaaagccaagaagagaggactgccacagttggga
acgttgggtgcaggaaaccactacgccgagattcaggtggtggatgagatcttcaatgat
tacgccgcaaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagc
ggcagtcgaggcctcggccaccaggtggcgacagatgctttggttgcaatggagaaggcg
atgaagcgagacaagatcactgtgaatgaccgtcagctggcctgcgctcgcatcacatct
cctgagggtcaggactatctgaagggcatggcggccgccggaaactacgcctgggtcaac
cgctcctccatgaccttcctcactcgccaggcgttctctaaagtcttcaacacgacccca
gacgacctggacatgcatgtcatctacgacgtctctcacaacatcgccaaggtggaggag
cacatggtggacggcaaacagaagacgcttctcgtgcacaggaagggctcgacgcgggcg
tttcctccacaccatccgctcatacctgtcgactatcagctaacgggtcaaccggttctg
atcggaggaaccatgggcacctgcagttacgtgctgacgggcacagagcagggcatgacg
gagacgtttggcaccacgtgtcatggagcgggtcgagctctatccagagccaaatccaga
cgcaacttggacttccaggatgttctggataaactggcagacatgggcatcgccattaga
gtggcgtcaccaaagctggtgatggaggaggctcctgaatcctacaagaacgtcacagat
gtggtaaacacgtgtcatgacgccggcatcagtaagaaggccatcaagctccgacccatc
gctgtgattaaagggtaa
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