Megalobrama amblycephala (Wuchang bream): 125245992
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Entry
125245992 CDS
T08212
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mamb04121
]
125245992 (pdzrn4)
Enzymes [BR:
mamb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125245992 (pdzrn4)
Ubiquitin system [BR:
mamb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125245992 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
125245992
NCBI-ProteinID:
XP_048012777
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Position
LG14:12504988..12573400
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AA seq
791 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGREFSKSGHEGTVEAMRKEPIVVQVLKRGPSARNQ
NSLQEVCVVDVCTQTDITFEHIMALAKMRPTTPPVPDICPFLLSDSCHSIQTMEHEYFDC
PEYVASTQAEVDRAVEFECEEVELCRMNSQEKLGLTLCYRTDDEEDMAIFVGQVELNSIA
ARDGRIREGDRILQINGHDVQNRDEAVALLSNENSRSIVLLVTRPEGQMDGSWLDEDHHD
FLEELKMEILEEQKREAKRSKRHEEASASTDTATCSSSILEKDSGVKCSFEESSEYELLS
HPQTQTQKQLRDRWEAGSHLVPMDTVNLARQEKGQEGRLSENGVECDHFQQLLELKCQIR
NGGECGLVYRRSSTIECSLTEQGGSGVARELHMLNEELRSIELECQSIMQAHQLRRSKHD
SPRTDKESRLRRGKLADINEHPERLQSEKLRDKDSSSAYNTAESSRSTPLGTEGSPDHSL
QRRVHLTNQRNLRSTQHLQSPYNSPILSLPSQSSPTCSRAHTYTSSTPPLQTPITSPGSQ
GPSQAFSSSLEQSPSNPSESDPALPADDERCEKERNRNRVATARHYHSPYHSNTTTTQPP
STRHYQSYLQLLQQHSSSSLEYSQSQLSLLSLRGRPGPSQPGRIEWKVKVRADGTRYVAR
RPARDRILRERALRIREERSGGMTTDDDAVSELKMGRYWSKEERKQQLARAREQRRRREF
MQRSRLECLRETMGTASGEVSILELSHKKMLKKRNKKILDNWMTIQELMSHGARAPEGTK
VHNAFLSVTTV
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgggctgtaacctgtgcacgctgcagaagagagaggagcactataagctgctgtacgag
attgcacaggtgaatgggcgtgaattttccaagtctggacatgagggaacggtggaggcc
atgcggaaggaacccattgtggtgcaggtgctgaagcggggaccctctgcccggaaccag
aacagcctacaggaagtgtgtgtggtggatgtatgcactcagacagacatcacctttgag
cacatcatggctctggctaagatgagacccactaccccacctgtgccagacatctgcccc
tttctgctgtcggacagttgtcattccattcagactatggagcatgaatattttgattgt
ccagaatatgtggccagcactcaggcagaggtggacagggcagttgaattcgagtgtgag
gaggttgagctctgtcgaatgaacagccaggaaaaactgggcctgactctctgttatcgc
actgatgacgaagaagatatggccatttttgttggtcaggtcgagctcaacagcatagct
gcaagggatggacgcatcagagagggagaccgaattttacagataaatggtcatgacgta
cagaacagggatgaggctgttgctctcctctcaaatgaaaattccagatccatagtgtta
ctcgtcaccagacctgaaggacagatggatggaagctggctcgatgaggaccatcatgat
ttcctagaggagttgaagatggagattttagaagaacagaaaagggaagcaaagcgatca
aaaagacacgaggaagcctccgcaagtacagatacagcaacatgttcctcttccatacta
gagaaggacagtggtgtgaaatgcagctttgaggagagttctgaatatgaattgctctct
catccccaaacacagactcaaaaacaacttcgagacaggtgggaagcaggctcgcatttg
gttcctatggacaccgttaacttagccaggcaggagaagggtcaggagggcaggttgagt
gagaatggggtggaatgtgaccatttccagcaactcctggagctaaagtgccagatacgc
aatggtggagaatgcgggttggtctacaggcgaagtagtactatcgagtgcagcctgact
gagcagggtggaagtggagtggcacgggagctgcacatgcttaacgaagagctgcgcagc
attgaacttgagtgccagagcatcatgcaagcccaccagttgcgcaggagtaagcatgac
tcaccccgaacggataaggaaagtcgactgcgtcgtggcaagcttgcggatattaatgag
catcctgagagactacaaagtgagaagctcagagataaagacagctctagtgcctacaat
acagccgaaagttcccgctcaactccgttgggaacagaaggatcacccgaccactcgcta
cagcgtcgagtccacctgaccaatcagaggaatctgcggagtacccaacacctgcagagt
ccctacaatagtcccatcttgtctttacccagccaaagtagccctacttgcagtcgtgcc
catacatacaccagctccactccacccttacagacccccatcaccagtcccggttcacaa
ggacccagccaggccttttccagcagcttggaacaaagccccagtaacccctcggagtca
gacccagcgcttcctgctgatgacgagcgctgtgagaaagaaagaaaccggaatagggtt
gcaaccgctcggcactaccattcgccctatcacagcaacaccacaacaacccagcctccc
agcacacgccattaccagagttacctacagctcctacaacaacattcctcttcctctctg
gaatattcccagagccagcttagcctcctcagcctccgtggacggcctggaccctcacaa
cctggccgaattgaatggaaagttaaagtgcgagcagacggaaccaggtatgtggcacgt
cggcccgcacgagaccgtatcctacgcgaaagagccttacggatccgagaggaacgcagc
ggtgggatgactacagatgatgatgcagtcagcgagctgaagatggggcggtactggagt
aaagaagaacgaaaacagcagctagcacgagcaagagaacagcgacgcaggagggagttc
atgcagaggagccggcttgagtgcctcagggagaccatggggacggcaagtggggaagtc
agcatcctggagctcagccataagaagatgctgaagaaacgaaacaagaagatcctggac
aactggatgaccattcaagagctcatgagccatggagcaagagcacctgagggcaccaaa
gttcacaatgccttcctttcagtcaccacagtttag
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