Megalobrama amblycephala (Wuchang bream): 125248091
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Entry
125248091 CDS
T08212
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04136
Autophagy - other
mamb04140
Autophagy - animal
mamb04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125248091 (atg16l1)
04136 Autophagy - other
125248091 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125248091 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mamb04131
]
125248091 (atg16l1)
03029 Mitochondrial biogenesis [BR:
mamb03029
]
125248091 (atg16l1)
Membrane trafficking [BR:
mamb04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
125248091 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
125248091 (atg16l1)
Mitochondrial biogenesis [BR:
mamb03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125248091 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_DCAF4
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_NWD2_C
eIF2A
WD40_RFWD3
Beta-prop_IFT140_1st
Ge1_WD40
Beta-prop_WDR19_1st
KASH_CCD
Beta-prop_SPT8
DUF6212
Beta-prop_DCAF12
Crescentin
DUF7491
Uso1_p115_C
PUMA_CC
NET2A
Cytochrom_D1
PspA_IM30
Leu_zip
Lectin_N
Motif
Other DBs
NCBI-GeneID:
125248091
NCBI-ProteinID:
XP_048015634
LinkDB
All DBs
Position
LG16:41083712..41106878
Genome browser
AA seq
624 aa
AA seq
DB search
MAGRGVECLWKRHVVDQLKQRDRVQRQAFEEIIHQYNRLLERSDLQVVFSERLQTDKYEH
QNRHDLSPGTDGGRSDSLQQEMAQMRIKHQEELTELHKKRGELAQNVIELNNQIQQKDKE
IQSNEAKMLEYQQQISRLEGECRDLRNSLADLERANQTLRDEYDALQITFGALEEKLRKT
TEDNQELVTRWMAEKAQEANRLNAENEKDTRRRQAKLQKELADAAKEPLPIDPDDDIEVL
TEDAGKGTGETSPSRPLSRTSSRRVSQPPAPPPPGGLLDSISNMFGLSDSVQPGFVPSDS
RRRRSVNSFSTSPEAAEVPSACADVRVPSTALHIFDAHDGEVNAVRFSPGSRLLATGGMD
RRVKLWEVVSGRCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHT
LTGHSGKVLSARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVM
SGHFDKKVRFWDIRAETIVNELELLGRVTSLDLNQDRTELLTCSRDDLVKIIDLRSNAVR
QTFNAQGFKCGSDFTRVTFSPDGSYVAAGSADGVLYIWNVLTGKLDKTLDKGHSSAINSV
SWSPSGAYVASVEKGSKAVLWSDM
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgtggagtcgagtgtttgtggaaacgtcacgttgtggatcagctgaaacag
agagacagagttcagcgtcaggccttcgaggagatcatacatcagtataaccggttgttg
gagaggtctgatctgcaggttgttttttctgaacgtctccagaccgacaagtatgagcat
caaaacagacacgacctgagtccgggcactgacggcggccgcagtgactccttgcagcag
gaaatggctcagatgagaatcaaacatcaagaggagctgacggagctgcacaagaagcga
ggagagttggctcagaatgtgatcgaactgaacaaccagattcagcagaaagacaaagag
atccagagtaatgaagccaagatgttggagtaccagcagcagatctcccgtctggaaggg
gagtgccgtgaccttcggaacagtctggccgatttggaacgagccaatcagacgctgcga
gacgagtacgatgccctgcagatcacgttcggcgctctggaggagaaactgcggaaaacc
acggaggacaatcaggagctggtgacgcgctggatggcggagaaagcccaggaggccaac
agactcaacgctgagaacgagaaggacaccaggcgcagacaggcgaagcttcagaaggaa
ttggcggacgcagcgaaggaacctcttcccatagacccagatgatgacattgaagttctc
acagaggatgctgggaagggaacgggtgaaacgtcaccgagcagaccgctcagccgcaca
tccagtagacgagtgtctcagcctcctgctcctcctcctcctggcggactgctggactcc
atctctaatatgtttggcttgtctgattctgtccaacctggtttcgtcccgtctgactcc
agaagacgtcgttcggtgaattccttcagcacgtctcctgaagccgcagaagtgccgtcg
gcgtgcgctgatgtcagagttccctccactgcgctgcacatcttcgacgcccatgatgga
gaagtgaacgccgtgaggtttagtcccggttcccgtctgcttgccacgggaggaatggac
cgcagggtgaagctctgggaggtcgtatctgggcgatgtgaacccaaaggggcgctgacg
ggcagtaacgctggaatcaccagtatagagtttgatagtgcgggatcgtatctactggcc
gcctctaatgattttgcgagcagaatctggactgtcgacgactacagactgcggcacaca
ctcacaggtcacagtgggaaggttttatctgctcgctttctcctcgacaacgctcgaatc
gtctccggcagctacgatcgaacgctcaagctctgggatctacgcagcaaagtctgcatg
aagacagtgtttgctggttctagctgtaatgacatcgtctgcacggagcagtgtgtgatg
agcggacacttcgataagaaagttcgtttctgggacatcagagcagagactatcgtgaat
gagttggagttgctgggacgcgtaacatctttggacctcaatcaagaccggaccgagctc
ctgacctgctctcgtgatgacctggtgaaaataatcgatctgcgcagtaatgcagttcgg
cagacgttcaatgctcaaggattcaagtgcggttcagacttcaccagggtcacattcagt
cctgatggaagttatgtggcggccggttctgcagacggtgttctgtacatttggaacgtt
ctaacagggaaactagacaaaactcttgataagggtcacagttctgccataaattcggtg
tcctggtctccgtcgggcgcgtacgtggccagcgttgagaaaggcagcaaggccgtgctt
tggtctgacatgtga
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integrated database retrieval system
