Megalobrama amblycephala (Wuchang bream): 125248526
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Entry
125248526 CDS
T08212
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04510
Focal adhesion
mamb04512
ECM-receptor interaction
mamb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125248526 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125248526 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125248526 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mamb04147
]
125248526 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125248526 (col4a3)
Exosome [BR:
mamb04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125248526 (col4a3)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125248526 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125248526
NCBI-ProteinID:
XP_048016410
LinkDB
All DBs
Position
LG16:9758801..9804921
Genome browser
AA seq
1658 aa
AA seq
DB search
MDSCFIFRATLFGMMLLGLLTPAQTKGGCVCIGKSGCDCQGIKGQKGESGSRGMDGVTGN
QGHQGKEGPPGFPGPYGNMGRKGINGPKGSRGSSGSPGFFGSPGLPGIPGKEGPRGLPGL
PGCNGTKGEPGPPGFIGKMGLPGFQGTPGIQGPKGDSYVFLPSGQVKGLCGFPGRAGDKG
QPGMPGFPGPDGPEGPRGAPGINGIPGLQGEKGLEGRSVGRRGPTGQKGERGPPGIPGQK
GVKLFVSGPKEPKGDTGDRGDPGFPGQTGLCGPPGPKGMKGERGEPGAPGKPGKDGLQGE
LGPKGEPGDVGYPGAIGIAGEMGLKGDPGAPGVPGEFILINEMIKGQKGNPGPPGPPGLQ
GSEGFSGFPGSPGPPGIAIPGPKGIQGFPGFRGVKGEKGESAPVITGPPGRDGPPGERGP
PGDPGPPGTPRNCFLSKTGLKGLKGDKGITGPEGLRGDPGTQGDQGDLCRLCAASAADPG
PPGPPGAPGEPGEPGLGGLQGNKGSRGYKGPEGPPGPPGSLGLPGFPGPPGPKGDVGMIS
EIGEKGDKGNTGAVGPLGINGQDGMPGTPGFKGPSGAKGNPSPLGPKGNQGNPGICGEPG
CPGPMGSQGSMGVGQVGAPGEKGSLGVVGRQGNPGEPGEKGSPGPVQMTPGNPGEPGLPG
PSGLPGPPGNEGCAGVQGFPGLCGLKGEKGLSMPGVPGLTGPKGDKGVKGKPGPPGYGRV
GTPGPPGPPGMPGLKGEIAFGSPGPKGRQGLPGDEGGLGLPGISGPPGSSGCPGQRGRDG
PPGDCGVRGLDGLKGEAGVPGCCSPGAKGDEGPSGIRGLDGPTGLQGLKGPQGEIGPCGQ
GLPGLAGVPGMPGKIGQTGLVGIRGPKGFQGRDGPPGFPGTRGDQGSPGMFGPPGVDGNP
GPPGLQGPKGLMGRNGVPGDTGKPGEPGDPGTCGPKGLPSNVMCPGDPGDPGLPGLLGFP
GSKGELGFPGNYGECGKNGVPGGPGPPGPSGDPGQNGFPGNRGLNGNFGDPGVMGFPGVK
GLKGLPGLRGLTGPPGDPGPNGPKGIRGEPSPPGPGLPGLPGEKGEPGCPGVRGEKGDKG
ICGTNGLPGFPGLPGEIGETGVPGGPGPPGAPGDEGLDGFPGPPGCEGPCGPPGVPGSAG
APGPQGHRGEIGRDGIPGSAGDKGDRGYTTNGDPGPPGVNGEKGTKGCPGPPGPCGTPGP
YGPAGDIGPPGKPGEIGPLGYQGPPGICINGPKGEQGPNGLPGPTGLRGPRGPPGDPGPG
LKGDKGCIGPQGPAGPPGCTGDRGFSGEPGRDGNPGFKGLKGNMGPDGFVGPAGQKGHCG
PNGLPGLKGYKGFPGCKGPKGDDVVGEVIYIPGEPGLPGRVGEKGEPGERGPKGLRGPKG
AQGQRGGIGADGGVGPNGGPGPRGNTGPQGQQGPRGLSGEVGPKGSRGPSGGPKNDGFFF
TKHSQTVDLPVCPSGSTHLYFGYSLLFINGNNRGHGQDLGTLGSCLHRFSTMPFLVCNHN
DTCRYASRNDYSYWLSTDTPMPADETLISGDSLAQYISRCAVCEAPANVIAIHSQTSNIP
KCPTGWLPLWQGYSFVMQTGAGAEGSGQPLVSPGSCLEEFRKIPFIECHGRGTCNFYPDS
FSYWLASLDPSRMFSVPEPKTARHKEIISRCQVCMKLS
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggattcttgcttcatatttcgagcgacacttttcggaatgatgttgctgggacttctt
acaccggcacaaactaaaggggggtgtgtttgcattgggaaatcgggatgtgactgtcaa
ggaattaaaggacaaaagggtgaaagcgggtcacgtggtatggatggtgtgactggaaat
caggggcatcaaggaaaggaaggccctcctggatttcctggtccatatggaaatatggga
aggaaaggcatcaatggaccaaaaggttctaggggaagttcggggagccccggattcttt
ggctcaccgggactaccggggatccctgggaaagaggggccgagggggcttcctggtctc
ccaggatgcaatggaacaaagggggagcctggtcccccaggctttatagggaagatggga
cttcctggatttcaggggacaccaggaatccaaggacctaagggagatagctatgtcttc
ctgccctctggacaagtgaaaggactttgtggttttccaggcagagctggagataaaggt
caaccagggatgccagggttcccaggaccagatggaccagaaggtcctagaggtgcacca
ggaataaatggcattcctggattacaaggagagaagggtctcgagggtcgaagcgtggga
agacgtggacccacaggtcaaaagggggagaggggaccacctggtataccaggacagaaa
ggtgtaaagttatttgtatcaggaccaaaggagcccaagggtgacactggggatcgtgga
gaccctggattccctggacagactggtctttgtggtcctcctggtcctaaggggatgaaa
ggggaaagaggagagcctggggctccggggaaacctggaaaggatgggctgcaaggagag
ttaggccctaagggagagcctggagatgttggatatccaggagctattgggatagcaggg
gaaatgggactgaagggtgaccccggtgcccctggtgttcctggagagttcattttaata
aatgagatgatcaaaggtcaaaaaggtaatcccgggccaccaggacctcctggtctacaa
ggtagtgaaggtttcagtggttttcctggatctccaggtcctccagggatcgccatccca
ggacccaaaggaatacaaggtttcccaggatttagaggtgtgaaaggggaaaaaggtgaa
tctgcacctgtcatcacaggacccccaggacgtgatggcccaccaggggaacgaggaccc
cctggtgaccctggacctccaggaactccacgtaactgttttttgtcaaagactggacta
aaagggctcaagggtgacaaaggcataacaggccctgagggtctgcgtggagatcctgga
acacaaggagaccaaggagacctttgcagactgtgtgctgcttctgctgctgaccctgga
cctccaggaccacctggagctccaggcgaacccggagagccaggtcttggaggacttcaa
ggcaataaaggatcccgaggctacaaaggtccagagggtccaccaggtcctccgggttcc
ttaggtcttcctggatttccagggcctccagggcccaaaggagatgtagggatgatatct
gagattggggagaaaggagataaaggaaacacaggtgcagtaggaccattggggataaat
gggcaagatggtatgccgggcacccctggcttcaaaggaccatcaggagcaaaaggaaac
ccaagtcctctagggcctaagggcaatcaaggaaatccagggatttgtggggaacctggc
tgcccaggtccaatgggcagccaagggtcaatgggtgttggacaagtaggggcacctgga
gagaaaggaagtttgggagttgtgggccggcaaggaaatcctggagaaccaggtgagaaa
ggatccccaggaccagtacaaatgacacctggaaacccgggtgagcctggattgcctggt
ccttctggtctaccaggacctccaggtaatgaaggttgtgctggggttcaaggattcccg
ggattgtgtgggttaaaaggagagaaaggactgtcaatgccaggagttcctggacttact
ggtcccaaaggtgataagggtgtgaaaggaaagccaggtccacctggttatggaagggta
ggcacccctggccctccaggaccaccgggaatgccaggcctaaagggtgaaatagcattt
ggctccccagggcccaagggtcggcaaggcctgccaggagatgaagggggccttgggcta
ccaggaatctctggcccccctggatcatcaggatgtccaggtcaaaggggaagggatgga
ccaccaggagactgtggtgtacggggtcttgatggtttgaaaggagaggccggtgttcca
ggatgctgttcgccaggagctaaaggtgacgaaggaccctcagggatcagaggactagat
ggacccactgggctgcaagggctgaaggggccacagggtgaaattggaccatgtggacag
ggtttacctggtttagcaggtgtgcctgggatgcctgggaaaattggacagactggtttg
gttggtatccggggaccaaaaggtttccaaggtcgggatggtcctccaggctttccaggt
acacggggcgatcaggggagtcctggaatgtttggtccacctggagtagatggaaatcct
ggaccaccagggctccagggaccaaaaggtttaatgggtaggaatggagtgcctggtgac
acaggaaaacccggggaaccaggagatcctgggacctgtggtccaaagggactgccatca
aatgttatgtgtccaggggatcccggtgaccctggcctaccaggtcttcttggtttccct
ggctctaaaggggaattaggattcccaggcaattatggagaatgtgggaagaatggagtt
ccaggaggtcctggtccaccaggcccttctggtgaccctggccagaatggttttccagga
aatcggggtcttaatggaaactttggggatccaggagttatggggtttccaggagtgaaa
ggcctcaaaggtttacctggtcttcgtgggttgactgggcctcctggtgacccagggcca
aatggaccaaaagggatcagaggtgaacccagccctcctgggccaggacttccaggacta
cctggtgagaagggtgagccaggctgtccaggggttagaggggaaaaaggtgacaagggt
atatgtgggacaaatgggctcccaggttttccagggcttcctggggaaattggcgaaact
ggagttccaggaggtccaggacctccaggagctcctggtgatgagggtttagatgggttt
ccaggtccacctggatgtgaagggccctgtggtccaccaggtgttcctggttctgctgga
gctcccggtccacaaggacatcggggagaaataggcagagatggcattccaggatcagct
ggagataaaggagatagagggtacactacaaatggggatcctggcccacctggtgtcaac
ggagagaaaggtactaaaggctgtcctggacccccagggccatgcgggacaccaggtccc
tacggtccagctggagatattggtccccccggaaaacccggagaaatcgggccacttggg
taccaaggtcctcctggtatctgtatcaatggcccaaaaggggagcaaggacctaatgga
ctgcctggcccaacaggtctcagaggaccacgtgggcctcctggcgacccaggtccaggc
ctgaagggagataaaggctgcatcgggccccaggggcctgcggggccacctggttgtact
ggtgatcggggtttttctggtgaaccagggagagatggaaatcctggattcaagggtctg
aaaggaaatatggggccagacggttttgttggaccagctggccaaaaaggacattgtggt
ccaaatgggcttcctggattaaaaggttataaaggatttcccggatgtaaagggccaaaa
ggtgatgatgttgtcggtgaggtcatctatatccccggtgaacctggtttgcctggaaga
gttggagagaaaggagaaccaggagaacgtggacctaaaggattacgaggtccaaaagga
gcacaaggtcagaggggaggtataggtgcagatggaggtgttggaccaaatgggggccct
ggaccgagaggtaacactggcccacaaggacaacaaggtcctcgtggtttgtcaggcgaa
gtgggtcccaagggctcacggggcccatctgggggaccgaaaaatgatggattctttttt
accaagcatagccagacagtagatctaccagtctgtcctagtgggtcaacacatctgtac
tttggatattcacttctcttcatcaacggcaataaccgcgggcatggacaagacctagga
actctgggaagctgtttgcataggttctccaccatgcctttcctggtctgtaatcataac
gacacttgtcgctacgcctctcgaaatgattactcctattggctgtctactgacacgccg
atgcccgccgacgagacattaatttctggtgattcactggcacagtatatcagcaggtgt
gctgtgtgtgaggcaccagctaatgtaatagcaattcacagccagaccagtaatatccca
aaatgtcctacaggatggcttccactatggcaaggttactcctttgtaatgcaaacggga
gcaggtgcagaaggttccggacagccgctggtctcacctggatcctgtctggaagaattc
cggaagattccattcatagagtgtcatggtcgcggcacctgtaacttctatcccgattcc
ttcagctactggcttgcatcacttgaccctagcagaatgttcagtgtgccagagcccaag
acagcaagacacaaagagattatcagccgctgtcaggtctgtatgaagctgtcttaa
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