Megalobrama amblycephala (Wuchang bream): 125248576
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Entry
125248576 CDS
T08212
Symbol
scaf4b
Name
(RefSeq) SR-related and CTD-associated factor 4b isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamb03021
]
125248576 (scaf4b)
03041 Spliceosome [BR:
mamb03041
]
125248576 (scaf4b)
Transcription machinery [BR:
mamb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125248576 (scaf4b)
Spliceosome [BR:
mamb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
125248576 (scaf4b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
CAF1A_acidic
Motif
Other DBs
NCBI-GeneID:
125248576
NCBI-ProteinID:
XP_048016520
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All DBs
Position
LG16:complement(37727791..37767136)
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AA seq
860 aa
AA seq
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MDMDAVNAFNGEMMSMMDMTPPISRAKMMSVTKAGIKAIKLYKHVVQIVEKFIKRCKPDL
KVAGLYVVDSIIRQSRHQFGSDKDLFGPRFLKNFTVTFQNLFQCPADDKGKIMRVLNLWQ
KNDVFGMDVIQPLLDMATAPVLPVLENGTTVAAPSAMPMQMPVAVPESVPAPALVPAPAV
ATATPAPTVQAPVALAAVAQLLQGTGGVELQQLLQTLQQAGGAGLPQSTAPPTEQKTSLA
KSLLDRFDYDDEPEPVEEKTEPAPAAPITINLPPELQQALQAHLLSQIVNQTQMQGQMAS
QGQVPSQGQAPSQGQVPSQGQVAPQEFPSMVQTQIPDNPPQTIDETIIQPSTTQQPQDSG
ETERSVHDGRDRRHSRRTRSRSPRRRSSSHSRRSRSGSRSRRERSRHHRTRSRSRERRGR
SPRQRSEERRDREKERERRQKGLPPIKKETLSVCSTTLWIGQLDKKTQQQDIMSLMEEFG
QIESINMIPPRGCAYIVMVHRQDAYTALNKLSRGAVKVNQKTIKIAWALNKGIKTDLKKY
WDVERGVTYVPWEKVKPDDILSLQEGGMLDSETLKSEWRSAVAKLAVPVTEGPEGKQEDG
AALPSVSQSPSVQPVSTMNVIPGPLPNMSLPPPAMITGASPPPFPPLGFNPPQMPAGFHP
VIPVASMNPAGPPPSITESPTKDPSEDPPELSKSHMDPTGAQALSPPHLTGILGSRPGPL
PPHPPVGLRPPFIPAFPNNGPHPIHHPPNMPPQMMPPRGPNPMFSEPPAGRFRMPMMGPP
RHNGPPRHDGPPRHDGPPRHDGPLRHDFPPHRPPMGHRGEEPHWREQAPERGPDRFGNEP
PFHRGGWGRGGPRGRSRFGN
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggacatggatgcggtgaacgcctttaacggggagatgatgtccatgatggacatgact
cccccgatctcaagagccaaaatgatgtctgtaaccaaagcaggaatcaaagcgatcaag
ctttacaagcacgttgttcaaatcgtggagaagttcatcaagcggtgtaaaccagatcta
aaggttgctggtctctatgtggtcgactcaatcatccgacagtcccgccatcagttcggc
tcggacaaagatctgtttgggccgaggtttttgaagaacttcactgtaacgtttcagaac
cttttccagtgcccggccgatgacaaggggaagataatgcgcgtgctgaacctgtggcag
aagaatgacgtgtttggcatggacgtcattcagccgctgttagacatggccacggctcca
gtgctgcctgttttagagaatggaaccacggtcgctgctccttcagccatgccaatgcaa
atgccagtggcagtgccagagtcagtgccagcaccagcactagtaccagcaccagctgtt
gccacggcaacacctgcacccaccgttcaggccccagtggccctcgctgcagtcgctcag
ctcctccagggcacagggggtgtagagttacagcagctgctccaaactcttcaacaggcc
ggaggggcggggcttcctcagtccactgccccgcccactgagcagaaaacatcattagct
aagtctctgctggaccgatttgattatgatgatgaacccgaacctgtggaggaaaagact
gaaccagcccccgctgctcctattaccataaacctccctccagaattacagcaagccctg
caagctcatcttctgagtcaaatcgttaaccagacacagatgcagggtcagatggcgtcg
cagggtcaagtgccatcccagggtcaagcgccgtcccagggtcaagtgccatcacagggt
caggtggcaccccaggagttcccatcgatggttcagacccagataccagataaccctcct
caaaccattgatgagaccatcatacagcctagtacaactcagcagccacaggattcaggt
gagacggagcgctcggtgcatgatgggagagatcgaagacacagcagacgaacaagatca
aggtccccacggagacgatcgtcatcacactcacgcagatcgcggtccggttcacgttcc
cgccgagaacgctcgaggcatcatcgcacacgctcccgatccagagagcgcagaggacgc
tcaccgcggcagcgctcggaggagaggagagaccgggagaaagagcgagagcgccgacag
aaaggacttccaccaatcaagaaagaaactctcagtgtgtgcagtactacattatggatc
ggacagctggacaaaaagactcaacagcaggacatcatgagtctgatggaggagttcgga
cagatcgagtccatcaatatgattcctcccagaggttgtgcctacatcgtcatggtgcac
cgacaggatgcctacacagccctgaacaaactcagcagaggggctgttaaagtcaaccag
aaaaccattaagatcgcatgggcattgaataagggcataaagacggacttgaagaagtac
tgggatgtggagcggggcgtcacttatgtcccctgggaaaaagtgaaacccgatgatatt
ctcagtcttcaagaaggaggcatgcttgactctgaaacgctcaaatcagagtggagaagt
gctgtggccaagctggctgtgccagtaacagaaggacctgaaggaaaacaggaagatgga
gctgcactaccatcggtatcacagagcccttcagttcagcctgtttccacaatgaatgtc
atcccaggaccccttcctaacatgagtttaccacctccagccatgatcacaggagcctcc
cctccgcctttccctcctcttggattcaacccgccacagatgcctgcaggattccatcct
gtcatcccagtggcctctatgaaccctgcaggtcctcctccatccatcacagaaagccca
accaaagatccttcagaggaccctcctgagctttccaagagtcacatggacccgacagga
gctcaagctcttagtccgccacatctcacggggattctggggtccagaccgggacctcta
ccgccacacccccctgtggggctccgcccaccattcattcctgctttccccaataatggg
cctcatcccatccatcaccctccaaatatgcccccacaaatgatgccccccaggggcccc
aacccaatgtttagtgaacctcctgcgggccgatttcggatgcccatgatgggccctcca
agacacaatgggcctccaagacacgatggccctccaagacacgatggccctccaagacac
gatggccctctaagacacgatttcccccctcacaggccccccatgggtcataggggagag
gaaccgcactggcgggaacaagcacccgaaaggggcccggacagatttggaaacgagcca
ccgtttcatcggggtgggtggggcaggggcggccctcgtggacgaagtcgctttgggaac
tga
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