Megalobrama amblycephala (Wuchang bream): 125248825
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Entry
125248825 CDS
T08212
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125248825 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mamb03041
]
125248825 (dhx16)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125248825 (dhx16)
Spliceosome [BR:
mamb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125248825 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
Flavi_DEAD
AAA_30
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
125248825
NCBI-ProteinID:
XP_048016911
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All DBs
Position
LG16:complement(8950583..8972842)
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AA seq
1050 aa
AA seq
DB search
MASLEQWVSDQLHDILGLSDRYVAQFMIGLVQKSSGPQDFVARLQETGTIDIDQRITAFA
HELYNKAPKKHVVEKPARAIERQVIEMERKNRTYTLLEDSESDGETVKERGKEKKTKDRD
KGKKRKHLRQKREESPSSSEEDKKKSSKVTDEPKKEEEEEEWEREERERLQDLEERDAFA
ERVKQKDKDKTRHVLERNDKKAYEEAQKRLKMAEEDQRKMLPELRKESRRQYLSKREQEK
LEDLEAEIADEEYLFSTQKLTDKERKDLEYKRQIRDLARDYKKAGAKEQEERKNRYYMPE
EKRNKSIPQKDMELEFEETPREGGGEQGRWEEARVATATLQFGAREERERRIKEEQEKYQ
LILEEEEMINFVSTAITMKGTLSEKESEPELSQVEKDKLSIQEVRRSLPIFPYREDLLAA
IKDHQILVIEGETGSGKTTQIPQYLLEDGYTEGGMKIGCTQPRRVAAMSVAARVAQEMNV
KLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHTDI
LFGLIKDIARFRPDLKVLVASATLDTERFSSFFDDAPVFRIPGRRFPVDIYYTKAPEADY
LEACVVSVLQIHVTQPTGDILVFLTGQEEIETCCELLQERCRRLGSKISELLVLPIYANL
PSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIV
TPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKSLG
INDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILAS
EHYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHMVLLNVYTQWVES
GYSTQWCFENFIQFRSMKRARDVRDQLEGLMDRIEVELCSSNGDSVPIRKAVTAGYFYHT
ARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWMIYHELVFTTKEFMRQVIEIENGWLLEV
APHYYKNKELEDSSSKKMPRKQGKAREELG
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggccagtctggaacagtgggttagtgaccagctccatgacatcctgggtttgagtgac
agatatgtggcccagttcatgatcggtctggtgcagaagtcttctggacctcaggacttt
gtggctcggcttcaggaaaccggaaccatcgacattgatcaaagaatcacagcgtttgcg
catgagctgtacaacaaagctcccaaaaaacatgtggtggaaaaacccgcccgagcgata
gaacgacaagtcatagaaatggagagaaagaacagaacctacactcttctggaggacagt
gagagcgatggagagacagtcaaagaaagaggaaaagagaagaaaacaaaagaccgggac
aaaggaaagaagaggaaacacctcagacagaaacgagaggaaagtccatcgtccagtgaa
gaggacaagaaaaagagctctaaggtcactgatgagccaaaaaaagaagaggaggaggaa
gaatgggagcgggaagagagagaaagacttcaagatctggaggagagggatgcatttgct
gaacgagtaaaacagaaagacaaagacaagacaagacatgtacttgaaagaaatgacaag
aaggcttatgaggaagctcagaaaaggcttaaaatggctgaagaggatcaaaggaaaatg
cttccagagttaaggaaggagtcacgtcggcagtatctgagcaaaagagagcaggagaag
ctggaagaccttgaggctgaaattgcggacgaggaatacctcttctccactcagaaactc
accgataaggaaaggaaagatctagagtacaagcggcagatcagagacctggcccgagac
tacaagaaagcaggagccaaagaacaagaggagagaaagaacagatactacatgccagaa
gagaaaagaaacaagtccattcctcaaaaagacatggagctggagtttgaggagactccc
agagagggaggcggggagcagggccgctgggaggaggcgagagtggccactgccaccctg
cagtttggggccagagaagagcgggaacggcggataaaggaggagcaggagaagtatcag
ctcattttagaggaagaggagatgatcaacttcgtcagcacggccattaccatgaaggga
acgctgtcagagaaggaaagtgaacctgagttatcacaagttgagaaagacaagctgtcc
attcaggaagtgagacgtagcctgcccatctttccttacagagaagaccttctagctgcc
atcaaagaccaccagatcttggtcatagagggagaaaccggatctggcaagaccacccag
atccctcagtatctcctggaagatggttacactgaaggaggaatgaagatcggctgcact
caacctcgaagagtggcggccatgtctgtagcagctagagttgcacaggagatgaatgtc
aaactaggaaatgaggtgggctacagcatccgttttgaggactgtacgtcagagaggacc
atcctgaagtacatgactgatggcatgttgctcagagagtttcttacagagcctgacctc
gccagctacagtgtgatcatcatcgatgaggcccacgagagaacgttacacacagacatc
ctcttcggtctaattaaagacattgcacgtttccgccctgatctgaaggttctggtggcc
agtgccactctggacactgagcgtttctccagcttctttgacgatgcacctgtgtttagg
attccaggtcgtaggttccctgtggacatctactacacaaaggctccagaggctgactat
ctggaagcatgtgtggtgtcagtgctacagatccatgtcactcagccgactggagacata
ctggtcttcctcacaggacaggaggagatcgagacttgctgtgaacttctacaggagaga
tgtaggagactgggctctaagatttctgagctccttgttctgcccatctatgccaacttg
ccctcagacatgcaggcaaaaatcttcaatcccactccgcctggagcgcgcaaagttgtg
gtggccacaaatatcgcagagacatctctcaccattgacggcatcatctacgttattgat
ccaggtttctgcaaacaaaagagctacaatgcaagaacaggaatggaatctctcattgtc
acaccctgttcacgggcctctgccaatcagagagcaggtcgtgcaggaagagtggctgct
gggaaatgttttaggctgtacactgcctgggcctttaaacatgagatggaggagaccact
gtccctgagattcagagaacaaacctgggaaatgtggttctgctgctcaaaagtcttggc
ataaatgacctgattcatttcgacttcatggatcctcctcctcacgaaacgctggtgttg
gctctggagcagctctacgctttgggcgccctcaaccacctcggtgaactcactaagctc
ggccgaaggatggctgaacttcctgtggaccccatgctgagtaaaatgattctggcttct
gaacattataagtgctctgaggaggttctgaccatcgcagccatgctgtcagtgaacaac
tccattttctaccgccccaaggacaaagtggtccatgctgacaacgctaggatgaacttc
gtggtaccaggaggagatcacatggtgcttctcaatgtatatacacagtgggtagagagc
ggttactccactcagtggtgcttcgagaacttcatccagttccgctctatgaagagagcc
cgagatgtgcgtgatcagctggaggggttgatggaccggatcgaggtggaactgtgcagc
tccaatggtgacagtgtgcccatccgcaaggcagtgactgcgggatatttctaccacacg
gcacgcttgagtaaagggggttataaaacagtcaaacaccagcagactgtttacgtccat
cccaacagctcactctttgaggaacagccacgctggatgatctaccacgagctggtcttt
accaccaaagagttcatgagacaggtgatagagatcgaaaacggctggctgctggaagtg
gctcctcattattataagaacaaagaactagaggacagcagcagtaaaaagatgccccgc
aaacaaggcaaagcccgtgaagaactgggctga
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integrated database retrieval system
