Megalobrama amblycephala (Wuchang bream): 125248843
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Entry
125248843 CDS
T08212
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03022
Basal transcription factors
mamb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125248843 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
125248843 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamb03021
]
125248843 (ercc2)
03036 Chromosome and associated proteins [BR:
mamb03036
]
125248843 (ercc2)
03400 DNA repair and recombination proteins [BR:
mamb03400
]
125248843 (ercc2)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125248843 (ercc2)
Transcription machinery [BR:
mamb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125248843 (ercc2)
Chromosome and associated proteins [BR:
mamb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125248843 (ercc2)
DNA repair and recombination proteins [BR:
mamb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125248843 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
AAA_11
Motif
Other DBs
NCBI-GeneID:
125248843
NCBI-ProteinID:
XP_048016930
LinkDB
All DBs
Position
LG16:complement(23578010..23587914)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYTKQTGAKNDFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQHHSNPSQPVCQFYEEFDTVGRQVPIPPGIYNLDDL
KDFGRRKGWCPYFLARYAILHANIVVYSYHYLLDPKIADQVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE
TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD
IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISHFATLVSTYSKGFTIIIEP
FEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQSVIITSGTLSPLDIYPRILDFRPVTVAS
FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYMYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLSKHF
LRQMAQPFRREDQLGLSLLTLEQLQSEDMLQKIAQIAHQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaatatcgatgggttattagtctactttccgtatgactacatttatcccgaa
caatactcgtacatgcttgagctgaagaggacgctggatgcaaagggtcatggagttctc
gagatgccctcaggaacgggaaaaacaatttctcttctttccctcattgttgcttaccag
aaggcttaccctttagaagtcacaaagctcgtctactgctctcgcactgtgcctgagata
gaaaaggttgtggaagagctaagaaaactaatggactattacacaaagcaaacaggagca
aaaaacgacttcctcgcactggcactttcttcacggaaaaacctgtgcattcatcctgag
gtgagctctctgcgttttggaaaagaagtcgatggaaagtgtcacagtttgacagcatcg
tatattcgagcgcagcatcacagtaacccgagtcaacctgtctgccagttctatgaggaa
tttgacacagttggcagacaagtgcccattccccctggtatatataacttggatgatctg
aaggactttgggcgtagaaagggctggtgtccgtacttcctggcacgttacgcaattctg
cacgcaaacatagtagtatacagctaccattacttactagatccaaaaattgcagaccag
gtctcaaaagagctcgcaaagaaatctgtagtcgtgttcgacgaggctcacaacatcgat
aatgtgtgtattgattccatgagcgtcaacattaccaggaggactctggatcgctgccag
actaatgtggaaaccctgcaaaacaccattagcagaattaaggaaacagatgctgccaaa
cttcgagaagaatacaggagattagttgagggtcttaaagaagcaaatgttgcccgagaa
actgacatatatctgtccaatccagttttgccagatgaaatcctccaagaggctgttcct
ggcagcatccgcaccgcagagcactttgtaggctttatgaagcgcttcctcgagtacctg
aaggcacgtttgcggatccatcatgtggtgcaggagagtgctcctcagttcctcaaagac
atcttcgagaaagtctgcattgaccgcaaacccctgagattttgtgctgagaggctgcgc
tcactgctgaggacactggagattgcagacatcgctgacttctcagccattaccctgatc
tcacactttgccacacttgtcagcacctacagcaaaggcttcaccatcatcattgagccc
tttgaagataaaacgccaacaatagcgaatcctgttcttcacttcagttgtatggacccc
tctatcgccataaagccagtgtttgggcgctttcagtcagtcatcatcacgtctgggaca
ctctctcctctggacatctacccacgcatccttgattttcgcccagtcactgtggcatcc
ttcaccatgacactggcacgaacctgcctgtgccctcttatcgttggccgagggaatgat
caggtagcgatgacctccaagtttgagaccagagaagattttgctgtgatccggaactat
ggaaacttgctgctggaaatgtccgccattgtccctgacggaattgtggcattcttcaca
agttacatgtacatggagaacattgtggcctcttggtatgaacagggaatccttgagaac
atccaaaggaacaagctcattttcatagagacccaggatgcagccgagactagcatggcc
ctggagaagtatcaggaggcctgtgagaacggcagaggagcaattctgctctcagtggca
agagggaaagtgtcagaggggattgactttgttcatcattttggacgtgccgttatcatg
tttggagttccgtatgtttacacccagagccgaattctcaaggcacggttggaatacctc
agagatcagtttcaaatccgggaaaatgacttcctgacgtttgatgcgatgcgccatgcg
gctcagtgtgtgggtagggccatccggggcaaaacagactatggcctgatgatctttgca
gataaacgttatgcacgagcagataagcgaggaaagctgccccgctggatccaggaacac
ctcacagatggaagcctaaatctgaccattgacgagacggtgcagttatctaaacacttt
ctgcgacagatggcccagcccttcagacgggaggatcagttgggtttgtctctgctgacc
ctggaacaattgcagtctgaggacatgctccagaaaattgctcagattgcgcatcaagcc
tga
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