Megalobrama amblycephala (Wuchang bream): 125248886
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Entry
125248886 CDS
T08212
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mamb04515
]
125248886 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
mamb04990
]
125248886 (lrfn1)
Cell adhesion molecules [BR:
mamb04515
]
Immunoglobulin superfamily
SALM family
125248886 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
mamb04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
125248886 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
fn3
Ig_2
ig
LRR_5
LRR_9
Ig_DSCAM-DSCAML_C
LRR_LRWD1
C2-set_3
Sp38
Motif
Other DBs
NCBI-GeneID:
125248886
NCBI-ProteinID:
XP_048017003
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Position
LG16:42007563..42167878
Genome browser
AA seq
747 aa
AA seq
DB search
MERLVFYVLVFGALVKAQHCPGRCICQTISPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITAVRRKDFLNMTSLVHLTLSRNTISQIAPHAFVGLKSLRALHMDGNRLTVINSDQLK
GLINLRHLILGNNQIHHVELSSFDEFVSTIEDLDLSYNNLRTLPWEAIARMTNINTLTLD
HNLIDHIDVGTFTLLTKLVRLDMTSNRLQTLPPDTLFQHAQVLSDPKTSSSSKLTVSFGG
NPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKHQVTKPYV
MEGQGVTLKCKAMGDPDPAIHWRFPDGKLVHNNSRTILYDNGTLDILITTLKDSGAFNCV
ASNAAGIATAAVEVNMIPLPLFVNNTGHMREADPGLSDITTSTKSGSNDTKPQNKRVVVE
NLTANSAVIHWPSERHIPGIRMYQIQYNSTVDDTLVYRMIPSASKTFKINDLAAGREYEL
CVLAVYDDGITSLTATRVVGCVQFHTVVEAGQCRFIPSQFLGGTMIIIIGGIIVASVLVF
IIILMIRYKAYSGADAAKTKAQGDSSVHVHSQTNGSRPGRSGSKQLAQQSEERPESPAGK
DCKALVLLKMDEIQEELKVELPPLCSEKAPPSRRASLCGPPSDDTQTDSSLTGSTMSLCL
IGPGAGATESPRKGPLANMGLLPSELARTRHRFSFDGDYALFQSHSYPRRARTRRHKSTT
QLNTDVSPPCSRRVTFSSTEWMLESTV
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctggtgttttatgtgctagtgttcggcgcgctggtgaaggctcagcattgc
ccgggtcgctgcatctgtcagaccatctcacccacgctcacgctcctctgtgccaagacc
ggactgctgttcgtgccgccgaccatcgaccgcaagaccgtggagctccggctgactgac
aacttcatcacggctgtccgcagaaaagactttctgaacatgacgagcctggtgcatctc
acgctgtcacgcaacaccatcagccagattgctccccacgcctttgtgggtttaaaatcc
ctcagagcgttgcacatggatggaaaccggctgactgtcatcaacagcgaccagctgaag
ggtttgatcaacctgagacaccttatactgggcaataatcagatacaccacgtcgagctg
tcctcctttgacgagtttgtgtccaccatcgaggacttggatttgtcctacaataacctg
aggacgttaccatgggaggcgattgccaggatgaccaacatcaacacgttaacgctggac
cacaatctcatcgaccacatcgacgtcgggaccttcacgctcctcaccaagctggtgcgg
ctggatatgacgtcaaaccgtctgcagacgctgcctccggacacgctgttccagcatgcg
caagtgctgtcggaccccaagacgtccagctcctccaagctgaccgtgagtttcggtgga
aaccctctccactgtaactgcgagttgctctggctgcgtcgcctgacgagggaggatgat
ctggagacctgcgcttctccagagcacctgatggacaagtatttctggtccatccaggag
gaagagttcatctgtgagccaccgctcatcaccaagcaccaggtcaccaaaccctacgtc
atggagggtcagggtgtcaccttgaagtgcaaggcaatgggcgatcccgatcctgccata
cactggcgctttcctgacggcaagttagtgcacaacaattcccgcaccatcctgtacgac
aacggcacattggacatcctgatcaccacgctgaaggacagcggcgccttcaactgcgtc
gcctccaatgcggccggaatcgccacagctgccgtcgaggttaacatgatcccgctgccg
ctgtttgtcaacaacacgggtcacatgagggaggcggatccggggctctctgacatcacc
acatccaccaaatctggcagcaacgacaccaagccgcagaacaagagggtggtggttgaa
aacctgaccgccaactccgccgtgatccactggccctcagaacgccatattcccgggatt
cgaatgtatcagatccagtacaacagcacagtagacgacaccctggtgtacaggatgatt
ccctcggcgagtaagacgtttaagataaacgatctggcggcgggtcgagagtacgagctg
tgcgtgttggccgtgtacgacgacggcatcacgtctctgacggccacgcgtgtggtgggc
tgcgttcagttccacacggtggtggaggcgggtcagtgccgcttcatccccagtcagttc
ctaggcgggaccatgatcatcatcatcggcgggatcatcgtggcgtccgtcctcgtcttc
atcatcatcctcatgatccgatacaaggcttacagcggggccgacgcagcaaagacaaaa
gcacaaggagactcttctgtgcacgtgcattcacagacgaacggaagcagaccgggtcgt
tccggctcgaagcagctggcacagcaaagcgaggagcgtcccgagtcgcccgccgggaag
gactgtaaggcactggtgctcctgaagatggacgagattcaggaggagctgaaggtcgag
ctgccgccgctctgctccgagaaagcaccgccgtcccggcgggccagtctgtgtgggccg
ccctccgacgacacgcagacggacagcagcctcacgggctccaccatgtccctgtgcctg
atcgggcccggcgccggcgcgaccgaatccccgcggaaggggccgctggcgaacatggga
ctcctgcccagcgaactggcccggactcggcaccgcttctccttcgacggagactatgct
ctattccagagccacagttacccgcgacgggctcgaacccgccgacacaaatccaccacc
cagctgaacacggacgtgtcgccgccctgcagtcggagggtgacgttcagcagcacagag
tggatgttggagagtacggtgtga
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