Megalobrama amblycephala (Wuchang bream): 125249165
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Entry
125249165 CDS
T08212
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03030
DNA replication
mamb03420
Nucleotide excision repair
mamb03430
Mismatch repair
mamb03440
Homologous recombination
mamb03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125249165 (rpa1)
03420 Nucleotide excision repair
125249165 (rpa1)
03430 Mismatch repair
125249165 (rpa1)
03440 Homologous recombination
125249165 (rpa1)
03460 Fanconi anemia pathway
125249165 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mamb03000
]
125249165 (rpa1)
03032 DNA replication proteins [BR:
mamb03032
]
125249165 (rpa1)
03400 DNA repair and recombination proteins [BR:
mamb03400
]
125249165 (rpa1)
Transcription factors [BR:
mamb03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125249165 (rpa1)
DNA replication proteins [BR:
mamb03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125249165 (rpa1)
DNA repair and recombination proteins [BR:
mamb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125249165 (rpa1)
MMR (mismatch excision repair)
125249165 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
125249165 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
125249165
NCBI-ProteinID:
XP_048017350
LinkDB
All DBs
Position
LG16:complement(25460216..25499598)
Genome browser
AA seq
602 aa
AA seq
DB search
MTVRLSEGAIESLTKGIEVSNPVLQCVNIRKIDGGNGLSRFRLMMSDGLHTMSSFMLSTQ
LNPMAEQNQLASNCVCMLKRSVTNVLKDGRRVVVILDMEVLKSADQMPGKIGDPTPYVEG
QSKAQQSTAPTPTARPLQPQNGSDGSMNRPPAQSFGKKPMAAPNTPGGSSKVVPIAGLNP
YQSKWTVRARVTNKSAIRTWSNSRGDGKLFSMELVDESGEIRATGFNHEVDKFYSLIEQG
KVYYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSHDVPMVQCDFISIADLESRE
KDTIVDVIGVCKNTEDVTRITTKNSREVSKRNIQLMDMSGRVIQLTMWGNDAETFDGSGQ
PILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHAMDGQSMTELRGP
GGGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQ
NGMYRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDSAEILLGQNSSYLGQLKDSN
EAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRKLA
AQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgactgttagactgtcagaaggggcaattgagtccctgactaaaggaattgaagtcagc
aaccctgttcttcaatgtgtgaacatccgcaagattgatggtggaaatggtctgtcccgt
ttccgtctcatgatgagtgatgggttgcacactatgtcctcattcatgctctccacacag
ctcaatcccatggctgagcaaaaccagttggcctctaactgtgtgtgtatgctgaaaagg
agcgtcactaatgttctcaaggatggacgacgtgtggtggttatactggacatggaagta
ctcaagtctgccgaccagatgccaggaaaaattggagacccaactccttatgtggagggt
cagtcaaaggcacaacagagtacagctccaactccaactgcacgtccattacagcctcag
aatggaagtgatggttcaatgaacagacctcccgctcagagcttcgggaaaaaacccatg
gctgcccccaacactcctggaggcagctctaaagttgtgcctattgccggcctcaatcct
taccagtcaaagtggactgttagagcccgagtcaccaacaagagtgccatccgcacatgg
agtaactccaggggcgatgggaagcttttctccatggagcttgtggatgaaagcggtgag
atcagagcaactgggtttaatcatgaggtggacaaattctactccctcatcgagcaggga
aaagtctactacatctccaaaggaaccctgaagatcgctaacaaacagttctcttcactc
aagaatgactacgagatgactctcaacggcgagacaagcatcatcccttgcgaggacagc
cacgatgtccccatggtgcagtgtgacttcatttccattgctgacctggagtccagggag
aaagacaccatcgtagatgtgattggagtatgtaaaaacacagaggatgtgacgcgcatc
acgaccaagaacagtcgtgaggtttccaagaggaacatccaattgatggacatgtctggc
agagtcatccagctcaccatgtggggtaatgatgcagagacatttgatggcagtgggcag
cccatcttggccattaagggggcaagattatctgactttggtgggcgttctctctccact
ctctacagcagcacagtcatgatcaaccccgatattcctgaagcatacaaactgcggggc
tggtatgataaggaaggacatgctatggatggacagtcgatgactgaattgagaggacct
ggtggtggtggaaacacaaactggaagaccctggcggaagtcaagaatgaacacttaggc
catggagacaaagctgattatttctcttgcatcgccaccattgtctacatccgaaaagag
aactgcttgtatcaggcctgtcccagtaaagactgcaacaagaaggtggtggaccagcag
aatggcatgtaccgctgtgagaaatgcgacaaagagtttccagacttcaaatatcgcctc
atgctctcggccaacattgctgattttggagacaaccaatgggtgacttgctttcaggac
agtgctgagatccttctgggccaaaactcaagttatctcggccaactcaaggactcgaac
gaagctgcatttgatgaggtctttcagcatgcaaacttcaatacgtttgtcttccggaac
cgagtgaagctggagacctacaatgatgaatctcgcattaaagtgacagtggtggatgcc
aagccggtggaccacagagaatacagcaaacggctgatcatcaacataagaaagttggct
gcacagtag
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integrated database retrieval system
