Megalobrama amblycephala (Wuchang bream): 125250220
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Entry
125250220 CDS
T08212
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mamb04131
]
125250220 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mamb04147
]
125250220 (copa)
Membrane trafficking [BR:
mamb04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
125250220 (copa)
Exosome [BR:
mamb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125250220 (copa)
Exosomal proteins of bladder cancer cells
125250220 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
125250220
NCBI-ProteinID:
XP_048018663
LinkDB
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Position
LG17:40687701..40708579
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVDTE
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSSDANHVALLAKHAIMICNKKLESLCNIHENIRVKSGAWAENEV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDL
EKEMVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGRAGQMVADLDMDAP
GAEGWGEDAELHLDDDGFMDAQEGLGDDGVIGKDEGGGWEVEEDLDLPPELDVPSVGGGG
AEGDGFFVPPTKGTSPTQMWCNNSQLAVDHMLAGSFETAMRLLHDQVGVVQFGPYKQLFL
QTLSRGRTCYLGLPSLPCLHSYPQRNWKDSGAKGGLPAVGLRLADLISRLQQCYQLTTAG
RFEDAVDRFRAILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQ
QKRLCEMAAYFTHCSLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPEVAQQ
TRKILAACEKSLTDAHQLNYDPHNPFDICAASYTPLYRGRPVEKCPLSGACYCPKYKGEV
CRVTQVTEIGKDVIGLRVSPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaattcgagacaaagtcggcccgagtgaaaggactgagtttccacccgaaa
cggccctggattctcgctagtctgcacaacggtgtcatccagctgtgggactatcgcatg
tgcactcttatcgacaagtttgacgagcatgatggtccagtcagagggattgacttccat
aagcagcagccgctgtttgtgtcaggaggagatgactacaagatcaaggtgtggaactac
aagctgcgtcggtgtcttttcactcttcttggacatcttgactacattcgtaccacattc
ttccatcatgagtatccctggatcctgagtgcctcagatgatcagaccattcgcatttgg
aactggcagtccagaacatgtgtctgtgtgctgacggggcataatcactatgtgatgtgc
gctcagttccatccctctgaggacctggtggtgtcggccagcctggatcagactgtgcgc
gtgtgggatatttccggtctgagaaagaagaacttgtctccgggtgctgtggacacagag
gtgcgcggcatctctggtgtcgacctgtttggggcgtctgatgctgtagtgaaacatgtt
ctggagggtcacgatcgaggcgtaaactgggcagccttccatcccagcatgcctctcatt
gtgtcaggagcagatgaccgccaggtcaagatctggaggatgaacgagtccaaagcatgg
gagttggacacctgtcggggacactacaacaatgtgtcctgtgcagtgtttcaccctcgt
caggagctcatcctgtccaactctgaggacaagagcatccgtgtgtgggacatgtccaag
aggacaggcgtccagacctttcgcagagatcatgaccgtttctgggtgctgggggctcac
cccaacctcaacctgtttgctgctggtcatgacagtgggatgctggtgtttaagctggaa
agagaacgcccagcttacgccgtgtatggtaacatgctgtactatgtgaaagatcgcttc
ctgcgtcaactcgacttcaacagcagtaaggacacggctgtcatgcagctacgcagtgga
tccaaattcccagtgttcagcatgtcctacaaccctgcagaaaatgctgtgttgttgtgc
actagagctactaacctggaaaacagcacgtatgatctctactccattcccagggagagc
gactcccagaatcctgatgctcctgagggaaagcgctcctctggtctgactgcagtttgg
gtggccaggaaccggtttgccgtacttgaccgcatgcactcacttctgattaagaacctg
aagaacgagattgtgaagaaggtccaggtgccaagctgtgaggagatcttttatgctgga
actgggtcactgctgctgcgtgatgctgatggagtcacgctgtttgacgtgcagcagaag
cgctctcttgccacggtcaaaattgctaaagtcaaatatgtggtgtggagctcagatgcc
aaccatgtggccctgctggccaaacacgccatcatgatctgcaacaagaagttagagagt
ctgtgtaacatccatgagaacatcagagtgaagagtggcgcctgggccgaaaacgaagtc
ttcatctacaccacctccaaccacatcaaatatgctctcacctctggcgatcatggtata
atccgcacattggatctacccatctacgtgacgagagtcaggggcaacagtgtgtactgc
ctggatcgggagtgcagaccacgagtgctaaccattgaccccactgagtaccgttttaaa
ctggctctggtcaatcgcaaatatgaggaggttcttcatatggtgcgtaatgctaaactg
gtcgggcagtccatcattgcctacctacagaagaaaggctacccagaggtggcgctgcac
ttcgtcaaagatgagaagacccgtttcagcctggcactggagtgtggaaacattgaggtg
gcgctggaggctgcaaaagccctggatgagcgaagctgctgggagcgcctcggcgaggct
gcacttctacagggccatcaccaggtggtggagatgtgctaccagagaaccaagaacttc
gacaagctcaccttcctgtacctcatcactggcaacctggccaagctcaggaagatgatg
aagattgccgagatacggaaggacatgagtggacactatcaaggtgctctttacctgggt
gacgtcagcgagcgtgtgcggatcctgaagaactgtggacagaagtctctggcttacctg
actgctgccactcatgggatggatgaggaagctgaagccctgaaggagacctttgacctg
gaaaaagaaatggtgccagaggtagaccccaatgctcaactgttgcagccgccacctccc
atcaaccccttagacaccaactggcctctgctaaccgtctccaagggcttcttcgaggga
gccattgctgccaaaggacgagcagggcagatggttgctgacctggacatggatgctcca
ggagcagaaggctggggagaagatgcagagcttcatctggatgatgatggattcatggat
gctcaagagggactgggtgatgacggagttattgggaaagatgagggaggaggatgggaa
gttgaagaagatctggacctcccgcccgaactggatgtaccttctgttggcggaggtggt
gcagagggcgacggtttctttgtgccgcctaccaagggcacaagccccacccagatgtgg
tgcaacaactctcagctggctgtggatcacatgttggctggctcttttgagactgctatg
aggttacttcatgaccaagttggtgtggttcagtttggaccctataagcagctgttcctg
caaactctgtctcgtggccgcacctgttacctgggcctgccgtctctgccctgcttgcac
agttacccccagaggaactggaaggacagcggggctaaagggggtctgccagcggtgggc
ctgcgtctcgctgatctcatttcacgcctgcagcagtgctatcagctgaccacagcaggg
cgctttgaagatgcggtcgatcgcttcagagccattctcctctccgtaccactgcttgta
gttgacaacaaacaagagatcgcagaggcacagcagctgatcactatctgtagggagtat
attgttggcctcaccatggaaacagagaggaagaaacttcctaaagacactctcgatcaa
caaaaaagactttgtgagatggcagcatatttcacacactgcagtctgcagccggtccac
atggtgttggtattgagaacggctctcaatcttttcttcaaactgcgtaacttcaaaaca
gcagcaggttttgctcgccgtttgcttgagctgggccccaaaccagaagtggcacaacag
acacgaaagattcttgcagcatgtgagaagagcctgacagacgctcaccaactgaactac
gacccccacaatccctttgacatctgcgccgcctcctacacgcccctgtaccgtgggcgg
ccagtagagaaatgtcccctgtcaggagcctgctactgccccaaatacaaaggagaggtc
tgcagggtcacacaggtaaccgagattggtaaagatgtgattggattgcgcgtcagcccg
ctgcagttccgttga
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integrated database retrieval system
