Megalobrama amblycephala (Wuchang bream): 125250574
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Entry
125250574 CDS
T08212
Symbol
trim55a
Name
(RefSeq) tripartite motif-containing protein 55a isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125250574 (trim55a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mamb04121
]
125250574 (trim55a)
Ubiquitin system [BR:
mamb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125250574 (trim55a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
Hex_IIIa
KH_PARP14_2
Spore_III_AB
Zn_ribbon_FGT1_2
LTXXQ
E3_UBR4_N
Motif
Other DBs
NCBI-GeneID:
125250574
NCBI-ProteinID:
XP_048019167
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All DBs
Position
LG17:complement(11585133..11591822)
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AA seq
445 aa
AA seq
DB search
MSVGLDYWCPRTRETMESLERQLICPICLEIFTKPVVILPCQHNLCRKCANDIFQASNPY
LPTRGGSSLGSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDMYKQESSSSSKPEPD
VKNDELMCEEHQEEKINIYCVTCSVPTCSLCKVFGSHQSCEVAPLKSVYETQKTELSDGV
AVLVGNNDRIQGIISQLEESCRSVEENGRRQKSRVCEWFDRLYALLEERRGDLTLKITAE
QQEKLDYISGLQRKYREHLDNAAKLVETGIQTMEESEMAIFLQNTKPLLQKIAEGRNVSH
LEKVERGYENMDHFTANFQPERRAILSIDFIRDGDDNEEDDDEEELAGTVIPETQASSRT
TPIPQRQTPVPNPPATTADTSQMSSKPNQSVNINPAENTPLFTPAPDSSLNPSTDAPAQV
NAGPSQTSEDGPRHVFSFSWLNVPK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgggtttggattattggtgccctagaacgcgcgagaccatggagagtttagag
aggcagctgatatgccccatttgtcttgagatcttcaccaagccggtggtaatcttaccg
tgccagcacaacctctgccgcaaatgtgccaatgacatctttcaggcctcaaacccctac
ttgcccacacgaggaggttcttccttgggctcaggcggccggttccgctgcccatcctgt
aggcatgaagtggttctggatagacacggggtgtatggcctacagaggaacctgctggtg
gagaacatcatagatatgtacaaacaggaatccagcagcagcagtaagcctgagccagat
gtgaagaatgatgagttgatgtgtgaggagcatcaggaagagaagattaatatatactgt
gtgacctgctccgttcccacttgttccttatgtaaagtgtttgggagtcatcagtcctgt
gaggttgctccactcaaatctgtctacgagacccagaaaacagagttgtctgatggcgtt
gctgtgttggttggcaacaatgacagaattcagggcatcatcagtcagctagaggaaagc
tgcagatctgtggaggaaaatggccgtaggcagaagtctcgtgtatgcgagtggtttgat
cgtctgtacgctcttttggaagagcgcagaggagacctcacactaaagatcactgcagaa
cagcaggagaaactcgattacatcagtggcctacagcgcaagtacagagagcacttggat
aacgcagccaaactagtggagacaggaattcagacaatggaggaatctgagatggccatc
ttcctgcagaatacaaagcctctactacagaagatcgcagaaggcaggaatgtgtctcat
ttagaaaaggtggagcgtggatatgagaatatggatcatttcactgcaaacttccagcct
gaacgaagagcaatactcagtatagacttcatcagggatggtgacgacaatgaagaggat
gatgatgaagaagaattagcaggtactgttattcctgagactcaagcatcttcaaggaca
acacccatcccgcagagacaaacacctgtaccgaaccccccagcaacgacagcagacacc
tcccaaatgtcatcaaaacccaaccaatcagtgaacatcaacccggcagagaacacgccc
ttatttacgcccgctccagactccagtctcaacccttctacagatgcgccagctcaggta
aatgccggtcccagccagacatctgaggatggaccacgccatgttttctctttttcctgg
ttaaatgtgccaaaataa
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