Megalobrama amblycephala (Wuchang bream): 125250869
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Entry
125250869 CDS
T08212
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125250869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mamb03041
]
125250869
03009 Ribosome biogenesis [BR:
mamb03009
]
125250869
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125250869
Spliceosome [BR:
mamb03041
]
Complex A
U1 snRNP components
U1 related factors
125250869
Complex B
125250869
Ribosome biogenesis [BR:
mamb03009
]
Eukaryotic type
Pre-60S particles
Helicases
125250869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Host_attach
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
125250869
NCBI-ProteinID:
XP_048019656
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All DBs
Position
LG1:2700655..2705629
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AA seq
613 aa
AA seq
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MPGYSDRDRGRDRGYSSGPPRFGGSRNGPPPGKKFGNPGDRLRKKHWNLDELPKFEKNFY
QEHHEVSRRSPQDVEHYRRTKEITVKGRDCPKPIMKFHEASFPNYVMDVITKQNWTEPTP
IQAQGWPVALSGKDLVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSRGGRGGGYRDDRRDRHSSSRRDFNSYSQDNRNGDSYGQKKVFGNKTQNGSSGYNNSS
SSSSFNGGYSNNGQGNFGNQSGGYGNQGYQNQQFGPSQGGVQNSMNHPPPFPFNPQQMPQ
SMQFPMAPPAFPQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagaccgcggtcgtgacagaggctacagcagtggcccccca
cgctttggaggcagcagaaatggaccacctccgggcaagaagtttgggaatccaggtgac
cgtctgcggaaaaagcactggaacctggatgagctccccaagtttgagaagaacttctat
caggagcaccatgaggtttctcggaggtcacctcaagatgttgaacactacaggaggact
aaagagatcacagtgaagggtcgagactgtcccaaacccatcatgaagttccatgaagca
agctttccaaactatgtaatggatgtgatcactaaacagaactggactgaaccaaccccc
attcaagctcaggggtggccagttgcacttagcggcaaagatttggtcggcattgcacag
accggctcgggaaaaaccctctcgtacttgcttcctgctattgttcacataaaccaccaa
ccattcctggagcacggagatggccccatttgcttggtgttggctcccacccgtgagttg
gcacagcaagtccagcaggtggcagcagagtacggcaaagcttctcgtctcaagtccacc
tgcatctatggaggcgctcccaaaggaccacagatccgggacctggaaaggggggttgag
atctgcattgccacacccggaaggcttattgatttcctagaagtcggaaaaacaaatctg
cgcagatgcacgtatcttgtgctggacgaagctgacaggatgcttgacatgggttttgaa
cctcagattcggaaaattttggaccaaatcagaccggaccgacagactctaatgtggagt
gctacgtggcccaaagaggtgaggcagctagccgaggacttcctgaaggagtatgtacag
atcaacgttggtgctctgcagctcagcgccaaccacaacatcctacagattgttgatgtt
tgcaatgatggcgagaaagaggacaaactgatacgtctgctggaggagatcatgagcgag
aaggagaacaagaccattatttttgtggagaccaaaaggaggtgtgatgaccttactagg
aggatgcgtagggatgggtggccagcaatgggtatccatggagacaaaagccagcaggaa
agggattgggtgctcaatgaattcaaatatggaaaagcgcccatcctcattgccacagat
gtcgcctccagaggactagatgtggaggacgtcaaatttgtcattaactatgactacccc
aacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaactggc
acggcgtacactttctttacgcccaacaacatgaaacaggctcacgacctcgtctctgtc
ctccgcgaggccaaccaagccataaaccccaagctcatccaaatggccgaagacagagga
ggtcgttcaaggggagggcgaggtggggggtatagggacgatcgccgggatcgccactcc
agcagcaggcgggacttcaacagctacagccaggacaaccgtaatggtgactcttatggg
caaaagaaggtgtttggaaacaagactcaaaatggatctagcggctacaacaacagcagc
agcagtagtagctttaatgggggttacagcaataacggacagggtaactttggcaatcag
tctggtggctatggaaaccaaggctatcagaaccagcagtttggtcccagtcaagggggc
gttcaaaacagcatgaaccaccctccaccgttccccttcaacccccaacagatgccacag
tccatgcagttccccatggcccctcctgcattccctcagtaa
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