Megalobrama amblycephala (Wuchang bream): 125251231
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Entry
125251231 CDS
T08212
Symbol
rc3h1a
Name
(RefSeq) roquin-1a isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mamb03000
]
125251231 (rc3h1a)
04121 Ubiquitin system [BR:
mamb04121
]
125251231 (rc3h1a)
Transcription factors [BR:
mamb03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125251231 (rc3h1a)
Ubiquitin system [BR:
mamb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125251231 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
Prok-RING_4
zf-C3HC4
zf-CCCH_4
zf_CCCH_4
Baculo_IE-1
FYVE
zf-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
125251231
NCBI-ProteinID:
XP_048020164
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Position
LG2:18210892..18241390
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AA seq
1084 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEESHRKPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVSGQVPKPPPVTLLTAAEDVKHYEESRTCVEDLALYLKPLSNTRGAG
LNGATQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLAKGLEAVRTVVHGLVDFIQNHSKKGGDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLGLRRQLSQSLTQLNEMDLAAGLLSDEG
LQMEGLPRKPSSITNGILAAGPGSTLAHLVSRGSDPSYEPSHKPGKMDSGSLSAPGSPPD
SLESIPKSGMLTNSLSRVAGDGSVGQKHMPAVPRVPYPYSPHQSELYYSEARAPPPPPSA
QYESSQYPAGNPYPHHHVHPRYTRHPAPDPGMPPYPDSYPSSYSSKHQYANPSSHYGYPS
HHDGRRHSAYAHPQTFASREEMVRRSPDIPPPLQPQSAAASYLPESAQERYATENYNHSS
QIRNYHRNAYTRAQPSLDYLHRRRQEIMAQLEERKVVSSPPFGSSHSYDPSYPQDMRGQS
HYMEENSHGFGHFRDPDYTASYSPWSCDTFGSYIGSKDMKSKEGMNSMETQNLDKGKSLR
AHNLELQRRAADVKDDDPIIPFGSLPTVSRFGAISRTSKPGYPPNSTMLPLPNSAKHAAD
YTYVNHSGWSGDSYQPHQTSQGHFNERSPAVQVREQLRMELQQVNQQISQQTQSRGLEKP
SSVMSQPPRVDWSSGSMSSEQLSLELHQVEREIDIRTQEMAMENHDGKYKRVSVENGQDE
HALQREDHPLTLSEGLNGSISLVQDCGLVSSSMSSLTSKTSSLSLSSEQVASSPDLPKNG
VVHS
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaagccccgcaatggaccgagtttctgttgtgtcccatctgcacgcaaacc
ttcgaggagagccaccgcaagcccatcagcttgggctgcggacacaccgtgtgcaaaatg
tgcctgaacaaactgcaccgcaaggcctgcccattcgaccagaccgccatcagcacggac
atcgagcagctgcccgtcaacactgcgctgctgcagctcgtcagtggccaggtacccaaa
cctccacccgtcaccttactgacagctgcagaggacgtcaagcactatgaggagtcccgc
acatgtgtggaagacctggcgctctatcttaaacccctgagcaacaccagaggtgcaggg
ctgaatggcgctactcagagcgtgctcagcaggcccatgcagcggaaactggtgactctg
gttcactgccagctggtggaggaggagggccgcatccgggccatgcgggcggcccgttct
ctgggtgaacgtactgtcactgagctcatcctccagcaccagaacccccagcagctctcc
tccaacctgtgggctgccgtcagagccagaggctgccagtttctcggccctgccatgcag
gaagaagcattgaagctggttcttctcgctctggaagatggttcggccctttcacggaag
gttctggtcctgtttgtggtccagagactcgaaccacgttttcctcaggcctcaaaaacc
agcataggacatgtggtgcagctcctctacagggcctcctgctttaaggtcactaaacgt
gatgaggattcctccttgatgcagctaaaggaggagtttcgcacatatgaggctcttcgg
agagaacacgactctcagattgttcagattgcaatggagggtggactgcgtatcgcccct
gaccagtggtcatctctactctatggcgaccagtcccacaagtcccacatgcagtctatt
atagacaagctgcagacaccagcatcctttgctcagagtgttcaggaactcaccattgcc
cttcagagaaccggagatccagccaatctcaaccgcctcagaccccatctggagctgctg
gctgacatcgaccccagcccagatgcccctgcgcccacatgggagcagctagccaaaggg
ttggaagctgtgcgtaccgttgttcacggcctggtggatttcatccagaaccatagcaag
aagggaggtgatcagcagcagccacctcagcacagcaaatacaagacctacatgtgccgg
gacatgaaacaaaaaggcggctgtcctcgtggagcaagttgcaccttcgctcactctcag
gaagagcttgaaaagtaccgtaagatgaataaacgtttgggattgcgccgacagcttagt
cagtccctgacccagctgaacgagatggaccttgccgctggtctgttatctgacgagggg
ctgcagatggagggccttccacgcaaaccctcttccatcaccaacggcatcctagcagca
ggacctggatccactctggcccacctggtttctagaggctcggacccgtcttatgagcca
tcacacaaaccagggaagatggactcggggagcctcagtgcccctggctcacctccagac
tcattggaatccatcccaaaatcaggaatgcttacaaattctctctctagggtggccggc
gatggctcagtcggacagaagcacatgcctgctgtgcctagagttccttacccatattca
ccacaccagtctgaactgtattactctgaagctagagcgccgccgccgccaccatctgcc
caatatgaatcctcccagtaccctgcaggtaatccttatccccaccaccacgtccaccca
cgctacacccgtcatcccgctccagatccaggcatgccaccatatccggactcttatccc
agctcctactcttcaaagcaccagtatgccaaccctagctcccattatggatacccttca
caccacgatggccgtcgccactcagcctacgcccatccccaaacattcgcctcacgggag
gaaatggtccgaaggagtccggacattcctccgccactacagccccaaagcgccgccgcc
tcgtacctgccggaatcagctcaggaaagatacgccacagagaactataaccactccagt
cagatcaggaattaccacaggaatgcctacacacgagcacagccctccctcgactacctg
caccgtcgcagacaggagatcatggcccaactggaggagagaaaggttgtttcctcgcca
cccttcggctcctcgcactcgtacgaccccagctaccctcaggacatgaggggacagagc
cattacatggaggagaactcccatggttttggacacttccgggatccggactacaccgcc
tcatattccccttggtcatgcgacacctttggttcctacatcggcagcaaggatatgaag
tccaaagagggcatgaactccatggaaacacaaaatttagacaaaggcaaaagtctgaga
gcgcacaacttggagctccaacgcagagcggcagacgtgaaagacgacgaccccatcatt
ccctttggctccctgccaaccgtgtctcgttttggagccatttcacgcacgtctaaacca
ggctacccaccaaacagtacgatgctgcctttgcctaactctgccaaacacgccgctgac
tacacctatgtgaaccacagtgggtggagcggcgactcctaccagccgcaccaaacgtct
caggggcacttcaacgagcgatcccctgccgtgcaggtgcgtgaacagctgaggatggag
ctacagcaggtcaaccagcaaatcagtcaacagactcagagccgcggccttgagaagcca
agctcagtgatgtcccagccaccacgagtggactggtcctctgggagtatgtccagtgaa
cagctgagtctcgagctgcaccaggtggagagagagattgacattaggacacaggagatg
gccatggagaaccacgatggcaagtacaagcgcgtctcagtcgaaaacggacaagacgaa
cacgctttgcaacgagaggatcatccactaactcttagtgagggcttaaacggctccatc
agtttggtccaggactgcggtcttgtcagtagcagcatgtcctcgctgaccagcaagaca
tcatctctcagtttgtcctctgaacaggtggccagcagccctgatctgcccaagaacgga
gttgtccactcctag
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