Megalobrama amblycephala (Wuchang bream): 125252163
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Entry
125252163 CDS
T08212
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamb03021
]
125252163 (setx)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125252163 (setx)
5.6.2.5 RNA 5'-3' helicase
125252163 (setx)
Transcription machinery [BR:
mamb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125252163 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
UvrD-helicase
AAA_30
AAA_22
ResIII
AAA_16
NAT10_TcmA_helicase
nSTAND3
DUF6428
Motif
Other DBs
NCBI-GeneID:
125252163
NCBI-ProteinID:
XP_048021219
LinkDB
All DBs
Position
LG18:36407513..36431300
Genome browser
AA seq
2378 aa
AA seq
DB search
MDKCLWCTKALKAEGDVAIVAILHRYSSGQLSEEMMASLNDDLNYCMECVMEYHRARDKV
PELHKHLWEKEKARLLHILGYYLDKELEEDDLFIIEDDHEKPVSMISPAEFHDRLRCPLF
EVLKYPYLLCYRDLCDLVVKALCKLQDLNSSLIVFEKYQGTYLLLVHPNEQVRRWAIDAA
KTLKSVDRDSFYDLQEIFTCMFYVIELGISLDFPDLDPEAYAGGTVKMLPSHLYDSQNKK
NYWLGICMLLTQLSAEAMDSLFMGEFNIPLCILNTMDRLKNEDNPASDPFWPALHCFMVI
LDRLGSKIWGQVDPSMAFQTITGAASYDAEIRSIQQKTIGMVKEEPEYDDNVVTCSQMVY
DCYASEKPNQASGSTSNSGICSNYVIYEDMQSLVKVLDSEMGRSMRVYGSTFLWFIPFVR
SIMELPELNASYISEVIHFLCDKILANRHVLTGQTSACDKVTEFFTRILIQIVELHSTEG
RMGILSRCAPKWVEVIVMCIVLSDEPHGPPDKMGGIHSVSSTSYNLGIVGRLPTSGGGIG
AIILGCMTLIRLLLKEGIKTGSVPRATHFLNLLNKQLRGATNKRWNLTHSESIELQRCLK
SVVRSMQEKPASASSVVPSPSTSSLEAATNTVISRKSMPTLKPQHEDQKAGPSRACGSSF
IKEEPLWNDENCFFDKELCSGLENIMKAKKEPPAPMLISELRPAVELAQIKPDLDKLQEI
RSKLNNQNLSKIEAITKRRQSESLKPVHLASAKEDLGFRAVEGDDDDEDDEPLNVRRARL
MKSSSYKIESSDSEVDSSDVGKTHARSTGNSKENVESSTIVISDDEDSDNDERPNDILRS
IDKECTMKNKSLEHPVLPESPGRDYDDLSESQVFEFETQQYVASAWDYSEFEAAVLSKKS
DQTLKPQVEKAPHEASPSGSSDTEMIPDEDIERACRQAEEKIRQRPQPQEPADSCALSKE
SSTAESWDKFVKPKPVQVKSTKTIPSEKRDLLQPKKPLIIDALAQKVRRNPWKRSSTVMD
IEQPSSSTTPSSSDMQSSSPSSSSVSSPYFSASTSRGTPAIVPPKKVRKLAEPESTAERL
GLKKKERKAFDLSQRSLDCVAKLRCHGQKVQVKPQQKAKRVCRPTKTSPQKRIVKGNKKL
LGSQDIQFFRQSREKHQRPATGAITTLAPKPTKTNQPGEVPSSKPTVACNGDGDLFTRFQ
PDPDQQQDNEKTVSESSNSRGDGVGSNRTIIESKYFQASEPADVNIEEKATHASNEEVDD
EWMFLTQMEPTDMEMCSQMEQIEDDNEELFLTQRDPVDMDLDTDSESDIPGQPVLTHKPP
HAPLSITMCNDEKVADHLFLKPGMPPMSQKKAKPSTTKIYNPSSRSASLVLEMEKGAKPP
PAANVAKAKIPRPPPAMPPPKTFKPVPPPQFQKPFPSQQTPLPLGPKLVTSTKISSTSEP
PSYKVYQRPEAPVHKPAPTMDQSPKFDLSILTQAILKWDYGMLDNYKSFGSPNDLCQLPL
KEVPVKFPSYLEYFNTLYPLLLNNAFEEMANEWLKEGRVKLNLKVQGIEYSNRTASASFT
ANISQESDMKQRYPKEDDLVLLWLPDNTGAYAHDEPNFHEAHPHFGYVSRSNVSRGPDSM
STLNLTIQTHGNVSSVNAQPVLCEVIGSLISIFREFRALCSLRNGSMLRPVLAPHVSYFT
HNLHSPPDLDVPEYNRDQARAISCGLAMIQRKEKTPKFLLIHGPPGTGKSKTIGGLLYKL
LSSGNNSAGSAGNLHSKTRRTRVLLCAPSNAAIDSLMKKVIVIFKEKCKNRNAPQGNCGD
INLVRLGSERTISKSLKLFSLDQQTKARAQRAQQVVEADVQRRKEQLDQNIDNISQRCAK
TPKDSTDFKRLMEQKRELLKEREGLSRQSKECRSRRQESQAFVLQNAHVICCTLSTSGSI
VLENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRSPSIILVGDPNQLPPTVVSQKAK
EFGYDQSLMARLCKNLHPSNPQLSPILLLSVQYRMHPDICEFPSKYIYNSALQNDWQGQC
REYDQEQWTITKSELRLLRSLRGPCMCETAQKRCSFTWPFKPYKVFDVTDGREMKERDSF
VNPKEVSLVLLLLKLLGEKQSVRVGVITPYNAQKQLILESIRGSGINKQLQVEIDTVDGF
QGREMDCIIVSCVRASSEMGSIGFVGNRQRMNVTITRARFSLFILGHLRTLREQSDWGAL
IEDAGRREAIIKTTQRDFESNVKKILKRDPPTRSLSHPPLARSSTVTAPVPHSPMEIEPG
PAPHSHRDMSSGQAQQPMPRLIPLECPKDPRNSDRPTDPRFTERRPIREQAQDRRGLPAP
RLPTHRANSYDADSQSTGQSSRYSSKHRGFSPPRRHRR
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atggataagtgcctgtggtgtaccaaggccctaaaggcggagggagatgtggcgatcgtt
gccatcttgcatcgctacagttcagggcagctgtctgaggagatgatggcctctctgaat
gatgatctcaactactgcatggagtgtgtgatggagtatcatcgagccagagacaaggtc
cctgaactgcacaagcatttgtgggaaaaagaaaaggctcgactcctgcatattttggga
tactatctggacaaggagcttgaagaagatgatctatttatcattgaagacgatcacgaa
aagccggtgtcaatgatctctcctgcggaattccatgaccgtctccgctgcccactgttt
gaagttttgaagtatccgtacctgctttgctaccgtgatctgtgtgatttggtggtaaag
gccttgtgcaagctgcaggatttgaatagctctttaattgtgtttgagaagtatcaagga
acatatctgcttcttgttcatcccaacgaacaggtgcgccgttgggcaatcgatgctgca
aagacattgaagagtgtggacagggacagcttctatgaccttcaagagattttcacttgc
atgttttatgtcattgagcttggaatatctttggattttccagacttggatcctgaggct
tatgcagggggcactgtaaaaatgctgccgtctcacctctatgattcacaaaataagaag
aactattggctaggcatctgtatgttgctaacgcagctcagcgctgaggcaatggactct
ctgttcatgggagagtttaacatcccactttgcatactcaacacaatggataggttgaaa
aatgaggataacccagcttctgacccattctggccagccctccactgttttatggtaatt
ctggaccgacttggttctaagatctggggtcaggttgaccctagtatggctttccagact
atcactggagcagccagctatgatgcagaaataagaagcatccagcaaaaaaccataggg
atggttaaagaagagccagaatatgatgacaatgtggtgacttgcagtcagatggtgtac
gactgttatgcctcagaaaaaccgaaccaagcatctggttcaacatccaacagtggtatt
tgcagtaactatgtgatctatgaggatatgcagtccttggttaaagtgcttgattctgaa
atgggccggagtatgcgtgtatatggaagcacttttctgtggtttattccatttgtgcgt
tccataatggaacttccagagctcaacgcctcatatattagtgaagtcattcactttcta
tgtgataagatactagctaatcgacacgtactgactggacagacaagtgcttgcgataaa
gtgaccgagttcttcacccgtatcctcattcaaattgttgagctacactctacagaagga
cggatgggaatactttctcgctgtgcccccaagtgggtggaagtgattgtcatgtgcatc
gtcctatcggatgaaccacatggaccaccagacaagatgggtgggattcacagcgtcagt
tcaacctcatacaatcttgggatagtagggagactgcctacatctggaggtggtattggt
gccataattctaggctgtatgacactgattcgactgctgctgaaagaaggtataaagacg
ggatctgtcccacgtgctacccattttttgaatttgcttaacaagcagctgcgtggagct
acaaacaaacgatggaatctaacacattctgagtctattgagcttcaaaggtgtttaaaa
agtgtagtccggtcgatgcaagaaaaacctgcttctgcatcctctgttgttccatcccca
tctacatcatcattagaggcagcgacaaacacagttatttccagaaaatcaatgccaacc
ctgaaaccacaacatgaggaccagaaggcaggtccaagcagagcctgtggctcctctttt
attaaagaggagccactttggaatgatgaaaattgcttctttgataaagagttatgcagc
ggtcttgagaacatcatgaaggctaaaaaggaacctcctgcccccatgttaatttcagag
ctgagaccggctgttgagttggcacaaattaaaccagatctggataagctgcaggaaatt
cgatccaaattaaataaccagaatttgtcaaagatcgaagccattaccaaaagaaggcag
agtgagtccttaaaacctgttcacttggcatcagctaaggaggatcttggttttagagct
gttgagggggatgatgatgatgaggatgatgaacccctcaatgtcagacgagcccgattg
atgaaatcctctagctacaagattgaatctagtgactctgaagttgactctagtgatgtt
ggaaaaacgcatgccaggtccacaggcaactctaaggaaaatgtagagtccagtaccatt
gttatctctgatgatgaagattctgataatgatgaaaggccaaatgacatcctgaggtct
attgacaaggaatgtacaatgaaaaataaatctctagaacatcctgttttgcctgagagt
ccagggcgtgattatgatgatctcagtgaatcacaagtgtttgagtttgagacccagcaa
tatgtggcatctgcctgggattattcagaatttgaggcagcagtcttatcaaagaaatca
gaccaaacactcaaaccacaggtggaaaaagctcctcatgaagcgtctccctcaggtagt
tcagatactgaaatgattccagatgaggacattgagagggcctgtcggcaagcagaagag
aagatcagacaacgaccgcagccacaagagccagcagattcgtgtgcattgtccaaagaa
tccagtactgcagaaagctgggacaaatttgtcaaaccaaaacctgtgcaggttaaaagc
acaaaaacaattccatctgagaagagagaccttttacagcctaaaaagccattgataatt
gatgcccttgcccaaaaagtcaggcgcaacccatggaaacgcagctccacagttatggac
atagaacaaccttcctcgtcaactactccatcctcatctgatatgcaatcttcctctcca
tcctccagctccgtttcctctccttatttttctgcttccacctcacgtggcacccctgcc
attgttcctccaaagaaggtgcgtaaacttgctgagccagaatcaacagcagagcgtttg
ggattaaaaaagaaggaaagaaaagcctttgatctttctcagcgttccctggattgtgtg
gctaaactgaggtgccatggccagaaagtgcaggtgaaaccacaacagaaggcaaagcga
gtgtgtcgacccactaagacctctccacagaaacgtatagtaaaaggcaacaagaaactt
ctgggatctcaagatattcagtttttcaggcaaagtcgtgagaagcatcagaggccagca
acaggagcgatcacaacattagctcccaaaccaacaaagacaaatcagccaggtgaagta
ccctcatcaaaacctacagttgcatgcaatggggatggtgatctctttactcgctttcaa
ccagatcctgaccagcagcaggataatgaaaagaccgtatcagaatccagtaattctaga
ggtgatggggttggaagtaataggacaataatagaatccaagtactttcaagccagtgag
cctgctgatgtcaacatagaagaaaaagccacccatgcttcaaatgaggaggttgatgac
gaatggatgttcctcactcagatggaacccaccgacatggaaatgtgttctcaaatggag
cagattgaggatgacaatgaagaactctttcttacccagagagatcctgttgacatggac
cttgatacagatagtgagtcggatatcccaggtcaaccagtgttgacgcataaacctcct
catgcccctctttcgattaccatgtgtaatgatgaaaaagttgctgatcatttgttcttg
aagcctggcatgccaccaatgtctcagaaaaaggccaaaccttctaccacaaaaatatac
aaccccagttcccgcagtgcctcactagtcctcgaaatggaaaaaggagctaagcctcct
cctgctgctaatgttgctaaagcgaagattccccgaccacccccagctatgccaccccct
aaaacattcaagcctgtgcctcctccacaattccaaaagccatttccttcacaacaaact
cctctgcctctgggccccaagttggtcactagtactaaaataagctctacttcagagcca
ccatcttacaaggtataccaaagacctgaggctccagttcataaaccagcacccacgatg
gatcaaagtccaaagtttgacctttcaatcttgacccaagcaatccttaaatgggattat
ggaatgcttgacaattacaaatcatttgggagtccaaatgatctatgccagctgccgctg
aaggaggtgccagttaagttccctagctacctggagtacttcaacaccttgtaccccctg
ctgctaaataatgcatttgaagagatggctaatgaatggctcaaagagggcagggtcaag
cttaacctaaaggtccagggaatagaatacagtaatcgcacagctagcgccagcttcaca
gcgaacatttctcaggaaagtgatatgaagcaacggtacccaaaagaagatgaccttgtg
ctgctttggctgccagacaacactggggcatatgcccatgatgaaccaaatttccatgaa
gcacatcctcattttggttatgtatcccggtccaatgtttccagaggtccagattccatg
tcaaccctaaacttgacaattcagacccatggtaatgtatcttcggtgaatgcccaacct
gtgctctgtgaagttattggatctttgatcagcatattccgggagttccgtgcactgtgt
tcgctgcgaaatggatcaatgttgcgtcctgttcttgctccacatgtgtcttatttcaca
cacaatctgcatagcccaccggatctggatgtaccagagtacaacagggaccaggcaaga
gcaatatcctgtggtcttgccatgatacagagaaaggagaagaccccaaaatttctcctt
attcatggtcctccaggaactgggaagagtaaaaccattggtggtctgttgtacaaacta
ctgtcttcgggtaataacagtgctggttctgcggggaaccttcactccaagactcgaagg
acacgcgttcttctctgtgcaccctctaacgctgccattgacagtctgatgaagaaagtc
attgtgattttcaaagaaaaatgcaaaaacagaaacgctcctcaaggtaactgcggtgac
ataaacttggtaagactgggaagtgaaaggaccatctcgaaatcgctaaaacttttcagc
ctcgaccagcagactaaagctagagcacagcgagcccagcaagttgtagaagctgacgta
caaaggcggaaggagcaactggaccagaatattgacaatatctcccagcgatgtgcaaag
acaccaaaggattctactgatttcaagaggttgatggagcagaagagggagcttctgaaa
gagagagaaggactgagtcggcagagtaaagagtgtcgtagtaggcgtcaagagagtcaa
gcatttgtgctgcagaacgcccatgtgatctgctgcactctcagcaccagtggaagtatt
gtcctcgagaatgcattccgtcgactgggacatgaaccatttagctgtgttatcatcgat
gaggctagtcaggccaaagaaactgagacgctgattcccatgctttacagaagtccttcc
ataatccttgttggtgatcccaaccagcttccaccaaccgttgtctcccagaaagcaaag
gagtttggctatgaccaatctcttatggcaaggttatgcaagaatcttcatccatcaaac
ccacaactctcgcccatcctcctcctcagcgtgcagtatcgcatgcacccggacatctgt
gaattcccctcaaagtacatctacaacagtgctcttcagaacgactggcaggggcagtgc
agggagtatgatcaggagcagtggactataaccaagtctgaattaagactcctaaggtca
ttgagaggaccgtgcatgtgtgagaccgctcagaaacgctgttccttcacctggcccttc
aagccttacaaagtgtttgacgtgacggatgggagagagatgaaggaaagagattcattt
gtgaacccaaaagaggtcagtttggtcttgctgctgttgaaactgctgggcgagaagcag
tcagtgcgagtgggtgtcatcacaccctacaatgcccagaaacaactcatactggagtcc
attaggggttcaggcatcaacaaacaacttcaggtggaaatagatactgtcgatggcttt
cagggcagagaaatggactgcatcattgtgtcttgtgtaagagctagcagtgaaatgggt
tccattgggtttgttggaaatcggcagaggatgaatgtaaccattaccagagccagattt
agtctcttcatactgggacatctacgcacactcagggaacaaagtgattggggagcgttg
attgaggatgctgggagacgggaagctataatcaaaacgacgcaaagagattttgaaagc
aacgtcaagaagattcttaaacgagatccgccgactcgcagtctctctcatccccctctt
gcgagatcaagcaccgtgaccgcacctgttccgcattctcctatggaaatcgagcccggc
cccgcgccacactcccaccgtgacatgagcagcggtcaggcacagcagcctatgccacgt
ctgataccattggaatgccctaaagacccacggaacagcgacaggcccacagatccacgg
tttacagagcggcggccaatcagagaacaggcacaggacaggcggggcttaccggcgcca
cgcctcccaacacacagagctaattcgtacgatgctgactctcaaagtaccggccaatct
tccagatactcttcaaaacaccgcggtttctcgccgccaagacgacacaggagataa
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integrated database retrieval system
