Megalobrama amblycephala (Wuchang bream): 125253181
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Entry
125253181 CDS
T08212
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamb03021
]
125253181 (taf1c)
Transcription machinery [BR:
mamb03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
125253181 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
125253181
NCBI-ProteinID:
XP_048022962
LinkDB
All DBs
Position
LG18:complement(33709782..33732743)
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AA seq
1049 aa
AA seq
DB search
MDNTFPRQLFPHLYFDGPPDVQTKHNYGGWGSYERVLAVGAGLCDAEQSSTHPEFESQHT
VSGEEWVPVRPAVTPLMPAFEGAKVTSVDLPDPMDFPEHMHYFYQHYCMDAFSTMGHLLY
DNFSFRNKRGFMPMKWSRKFIKGLSYKRCEYGHYLKRIRRLHYLLRDIVSDVPPSLLSSL
LYEELSSQREQKEFSSDSTGGALGYVPLYENGGCLVYPGGVRMDKLFFHSVVQQSNDDKP
PSFVMQPKPFEFSLNGTIRQLSVGNMEDQGNVAVRSDYFCSVWVLGIKRRPLLVDVIQAK
DRFTCVTASPHLPNELLVVNEWGAAYLWDAYKGLQKFREEHSNLYFNAKSPWRWCEFSCH
PRVMIYADRTGAELTDIRSDNCSYTLFRIGKTPGCLSGERVLLSKYLGKNNANHHLINTQ
FSTYLMDERVPSVPMLKWNHMMESPPVFACGLPAQTPSQTSKLLLGSQRSQEIVLLQYKG
GREQACQTQGPIQRLFSPKESLRHLDLQLPHKKHLAEERLSVAITGFTAIQKKDYLSVFQ
LTDTGDVFFQTLKLHKDQTTTNKDIPEQAVQSCANSDSQSSQSDSEIEGYQRAETRDGFF
QTSNLLPNQTQTNKDVPKQAVSVERTVETGESLNFQSHANSGGQSSQSDSETEGRQTSLG
NLIINDNVNNDHLNASDTNKDPLSSSVGNNPTCSTRPSIPKKDPDLQVAWNKWFEPIFKK
ASEKKHSYFRQIITDDLKGLKGKMRYNLIEDRSARLRRDLQEVMRKKELLSHGVTYLPHL
DVMSVPDPVDTNNWGDDLSQRLAAAWEGDWNQWWEEKLGLNREKKIAALRRKRQRAKMAR
ARRRMSLSGSFDTSISYQESVLGWSSAASQFQSSDDETLQKSQDMDMEEWRSRPEIQKKS
PVILRRFLNDQFTVEEPIRSPPQSPQRRCDEDLLTSLSKSPSSFQVERPVSGTSSIAEGM
DSGPRSASPTSTRTPVSQLKRRKESFLNSIPTSQTFSQNSAPDDGFSLSQVHLSTPTPSC
RISLSSQRLSQFKSSSQASKTKKKSRMGF
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggacaacacatttcctcgtcaactttttccacatttgtattttgatggaccgcctgac
gttcagacgaagcacaattatggaggctggggttcatacgagcgcgtgcttgctgttggt
gctgggctgtgtgatgctgaacaatcatcgacccatcctgagtttgaatcccagcacact
gtgagcggggaggaatgggtgccggtcagaccagcggttacccctttaatgccagcattt
gaaggtgccaaagtcacatctgttgatctaccagatccaatggattttccagagcatatg
cattatttctaccagcattactgtatggacgcattctccacgatgggacatttgctctac
gataacttctcgttcagaaataaacggggttttatgccaatgaagtggtctagaaagttt
ataaaaggcttgagttataaaaggtgcgagtacggacattacttgaagaggatccgtcgt
ttgcactatcttctcagggatattgtgagcgatgttcctccatctctcctttcctcgctc
ctctatgaagagctgagttctcagagggagcagaaggagttcagttcagattccacaggg
ggcgctctaggatatgtgcccttatatgagaacgggggctgtctggtctatcccggtgga
gtccggatggacaaactctttttccacagtgtggtgcaacagtctaatgatgacaagcct
cctagttttgtcatgcaacccaaaccttttgagttttctttgaatggaactattcgacag
ctcagtgtgggcaatatggaggatcaaggtaatgtggctgtgcggtcggattatttctgt
tccgtgtgggtcctaggaattaaaaggaggcctctgttagtggacgtcatccaggcaaaa
gatcgcttcacctgcgtcaccgccagtccacacctcccaaatgagcttttggtggtcaat
gagtggggagcagcatatctttgggatgcgtataaaggattgcagaagttccgtgaagaa
cattccaacctgtacttcaatgctaaatcaccatggcgatggtgcgagttctcctgtcac
ccgagagtgatgatctatgctgacagaacaggggcggagcttacagacataaggagtgat
aattgctcttacacattgttccggattggaaagacaccaggttgtttgtcaggagagcga
gtgttactatccaagtacctgggaaaaaacaatgccaaccaccacctcattaatacccag
ttttccacttacctcatggatgagcgcgttcccagtgttcccatgctgaaatggaaccat
atgatggagtctccgccagtatttgcctgcggtctgccagcacagactccaagccaaacc
agcaaattgctgcttggttctcagaggtcacaggaaatcgtgctactgcaatacaagggt
gggagagagcaagcctgtcagactcagggacccattcagaggctttttagtcccaaagag
agtctgaggcacctagaccttcagctaccccacaagaaacacctcgctgaggagagactg
agcgtagctattacaggttttactgctatacagaaaaaggactacctgtccgtttttcag
cttacagatactggagatgtctttttccaaacgttgaaactgcacaaagatcagactact
accaacaaggacatcccagaacaagctgtccagtcctgcgccaacagtgacagccaatct
tctcagagcgactcagagattgagggatatcagcgtgcagaaactagagacggctttttt
caaacatcgaatctgctaccaaatcaaacccagaccaacaaggatgtcccaaaacaagct
gtcagtgtggaacgtactgtagaaactggagagagccttaacttccagtcccacgccaac
agtggcggccaatcttctcagagcgactcagagactgaggggcggcaaacgtcgcttggt
aatttaataataaatgacaatgttaataatgatcacttgaatgcttcggataccaataaa
gacccattaagcagttctgttgggaataacccaacttgctctaccagaccaagcatccca
aagaaggatcctgatctccaggttgcatggaacaaatggtttgaacccatttttaaaaag
gcttcagaaaaaaaacactcttattttcgacagataataaccgatgatttaaagggctta
aaaggcaaaatgcggtataacctcattgaagatcgctcggcaagactgaggagagacctt
caagaggtcatgaggaagaaagagttactctcgcatggggttacgtacctgcctcacctg
gacgtgatgtcagttcccgatcctgttgacaccaacaattggggcgacgatctgagccag
cgcttggctgcagcgtgggagggcgattggaatcagtggtgggaggagaagctgggatta
aaccgggaaaagaaaattgcggctctccgtagaaaacgtcagagagcgaagatggcccga
gctcggcgtcgcatgtcgctttctggaagcttcgacacgtctataagttaccaagaaagc
gttttgggttggtcatcggcggcgagccagtttcagagttctgatgatgagactttgcaa
aaatctcaagacatggacatggaggaatggaggtccagacctgagatacaaaaaaagagc
ccggtcatactgagacggtttttaaatgatcagtttactgtggaagaacctatcagatct
cctccacaatctccccagagaaggtgtgatgaagaccttttgacatctttgtcaaaatct
ccatcttcctttcaggttgaacgaccagtctctggcacctctagtattgcagaagggatg
gattcagggcctcgttcagcatcacccacctcgactcggacgccagttagccaattgaaa
cggcgcaaggagtctttccttaattctattcccacttcccagacattttctcagaactct
gcaccggatgatggattttctttgtctcaagttcacctttctacaccaactccatcgtgc
aggatctccttgtcttcccagagactttcccaattcaaaagctcctcacaggcctccaag
acaaaaaagaagtctagaatgggcttctaa
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