Megalobrama amblycephala (Wuchang bream): 125253588
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Entry
125253588 CDS
T08212
Symbol
si:ch211-79m20.1
Name
(RefSeq) sex-determining region Y protein isoform X1
KO
K17386
platelet-derived growth factor subunit B
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04010
MAPK signaling pathway
mamb04020
Calcium signaling pathway
mamb04510
Focal adhesion
mamb04518
Integrin signaling
mamb04540
Gap junction
mamb04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125253588 (si:ch211-79m20.1)
04020 Calcium signaling pathway
125253588 (si:ch211-79m20.1)
09133 Signaling molecules and interaction
04518 Integrin signaling
125253588 (si:ch211-79m20.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125253588 (si:ch211-79m20.1)
04540 Gap junction
125253588 (si:ch211-79m20.1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
125253588 (si:ch211-79m20.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
mamb04052
]
125253588 (si:ch211-79m20.1)
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125253588 (si:ch211-79m20.1)
Cytokines and neuropeptides [BR:
mamb04052
]
Cytokines
Growth factors (RTK binding)
125253588 (si:ch211-79m20.1)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Growth factors/receptors
125253588 (si:ch211-79m20.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
125253588
NCBI-ProteinID:
XP_048023577
LinkDB
All DBs
Position
LG2:24656014..24670412
Genome browser
AA seq
488 aa
AA seq
DB search
MMSSRLLLLVLAALAACLRSGRAQGDPLPPSLVDLVMNSPISSVDDLKRLLDVESVEEDD
EIPENEMHSNGTHKRLPRSLSIQVAQQAMCKVRTEVMEVTRAMLDRRNANFLLWPPCVEV
QRCSGCCNTRIVQCVPVTIETRHLQMTKIQIINRQPVYEKVIIPVEDHVTCSCQSRVSAH
SPRLQTTTLALPRPHPKVTLPKSQSKEELHRNDELKHNQRLHLEDKESQELQWQSKNTVT
HTQGYQQSPYQHTISHTPVYVSRGDVPTKQTTLGDPHMMSDATQTEEVDHMKSEHSGDGM
SKKTQQHYDKHLQEDQQPRPQQPQDKTTPQQPKYNLSHNPVQSGHSIPQSSKLDTFSHTY
SHVEVIGQSSGLSEVLNHHSDQSEVRKHHHHHHQSEASNQNMQEREEQQEIQHHLRHQHH
RHHQLHQHTTQAVSQQQTSTQKTVTKAPPTTPSAPQTPPPLQPPRKRRRKHRKRMSKASM
RAMIMVMS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctcgcggcttctgctgctggtgctcgcggcgctcgcagcgtgcctgcggtct
ggtcgcgcgcagggggaccctctccctccatctctggtggatttagtgatgaacagcccg
atctcatccgtagatgatctgaagagacttctggacgtagaatccgtagaggaagatgat
gagatacccgagaatgagatgcactctaacggaacacacaaacgtcttcccagaagcctt
agcattcaggtggcccagcaggccatgtgcaaggtgagaacagaagttatggaagtgacc
cgtgcaatgctggacagacgtaatgccaacttcctgttatggcctccgtgtgtggaagtg
cagcgctgttcaggctgctgcaacacacgaattgtacaatgtgtgccagtcaccatagaa
acacgacatttacagatgacgaaaatccagattatcaaccgacaaccagtctatgagaag
gttatcatacctgtggaggaccatgtgacttgcagctgtcaatcacgtgtttctgcgcac
agcccacggctccaaacgacaactcttgctctgcccagaccccaccctaaagtaacgcta
ccaaagagccaatcgaaagaggagctacatcgcaatgatgaacttaaacataatcaaagg
ctccatttggaggataaagagagtcaggaactacaatggcagtcaaaaaacacagtcaca
cacacacaaggctaccaacaaagcccgtaccaacatacaatatcacacacgccagtttat
gtgagcagaggagatgttcccaccaaacaaaccacattaggagatccacacatgatgagt
gatgcaacacaaacagaggaggtcgatcacatgaaatccgaacacagtggtgacggcatg
tcgaaaaagacgcaacaacattacgacaaacatctgcaagaggatcaacagccaagacca
cagcaaccacaggataaaacgacaccacagcaaccaaaatacaatctttcccacaatccc
gtccaatcagggcacagcataccacaaagtagcaaattagacacttttagtcacacttac
agccatgttgaggtgatcggccaatccagcggcttatcagaagtgctaaatcatcactct
gaccaatcagaagttagaaaacatcaccaccaccaccaccaatcagaagcaagtaatcaa
aatatgcaggaaagggaagagcagcaagaaatacaacatcatcttcgtcaccaacaccac
cgacatcatcagcttcaccaacatacaacacaagcagttagccaacaacagacaagcaca
caaaaaacagtgactaaagctcctcccaccaccccctcagccccacagactccgccccct
ctccagcccccacggaagcgccgacggaaacatcggaagaggatgagcaaggcctctatg
agagcaatgataatggtgatgtcctga
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