Megalobrama amblycephala (Wuchang bream): 125253588
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Entry
125253588 CDS
T08212
Symbol
si:ch211-79m20.1
Name
(RefSeq) sex-determining region Y protein isoform X1
KO
K17386
platelet-derived growth factor subunit B
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04010
MAPK signaling pathway
mamb04020
Calcium signaling pathway
mamb04510
Focal adhesion
mamb04540
Gap junction
mamb04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125253588 (si:ch211-79m20.1)
04020 Calcium signaling pathway
125253588 (si:ch211-79m20.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125253588 (si:ch211-79m20.1)
04540 Gap junction
125253588 (si:ch211-79m20.1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
125253588 (si:ch211-79m20.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
mamb04052
]
125253588 (si:ch211-79m20.1)
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125253588 (si:ch211-79m20.1)
Cytokines and neuropeptides [BR:
mamb04052
]
Cytokines
Growth factors (RTK binding)
125253588 (si:ch211-79m20.1)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Growth factors/receptors
125253588 (si:ch211-79m20.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
125253588
NCBI-ProteinID:
XP_048023577
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All DBs
Position
LG2:24656014..24670412
Genome browser
AA seq
488 aa
AA seq
DB search
MMSSRLLLLVLAALAACLRSGRAQGDPLPPSLVDLVMNSPISSVDDLKRLLDVESVEEDD
EIPENEMHSNGTHKRLPRSLSIQVAQQAMCKVRTEVMEVTRAMLDRRNANFLLWPPCVEV
QRCSGCCNTRIVQCVPVTIETRHLQMTKIQIINRQPVYEKVIIPVEDHVTCSCQSRVSAH
SPRLQTTTLALPRPHPKVTLPKSQSKEELHRNDELKHNQRLHLEDKESQELQWQSKNTVT
HTQGYQQSPYQHTISHTPVYVSRGDVPTKQTTLGDPHMMSDATQTEEVDHMKSEHSGDGM
SKKTQQHYDKHLQEDQQPRPQQPQDKTTPQQPKYNLSHNPVQSGHSIPQSSKLDTFSHTY
SHVEVIGQSSGLSEVLNHHSDQSEVRKHHHHHHQSEASNQNMQEREEQQEIQHHLRHQHH
RHHQLHQHTTQAVSQQQTSTQKTVTKAPPTTPSAPQTPPPLQPPRKRRRKHRKRMSKASM
RAMIMVMS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctcgcggcttctgctgctggtgctcgcggcgctcgcagcgtgcctgcggtct
ggtcgcgcgcagggggaccctctccctccatctctggtggatttagtgatgaacagcccg
atctcatccgtagatgatctgaagagacttctggacgtagaatccgtagaggaagatgat
gagatacccgagaatgagatgcactctaacggaacacacaaacgtcttcccagaagcctt
agcattcaggtggcccagcaggccatgtgcaaggtgagaacagaagttatggaagtgacc
cgtgcaatgctggacagacgtaatgccaacttcctgttatggcctccgtgtgtggaagtg
cagcgctgttcaggctgctgcaacacacgaattgtacaatgtgtgccagtcaccatagaa
acacgacatttacagatgacgaaaatccagattatcaaccgacaaccagtctatgagaag
gttatcatacctgtggaggaccatgtgacttgcagctgtcaatcacgtgtttctgcgcac
agcccacggctccaaacgacaactcttgctctgcccagaccccaccctaaagtaacgcta
ccaaagagccaatcgaaagaggagctacatcgcaatgatgaacttaaacataatcaaagg
ctccatttggaggataaagagagtcaggaactacaatggcagtcaaaaaacacagtcaca
cacacacaaggctaccaacaaagcccgtaccaacatacaatatcacacacgccagtttat
gtgagcagaggagatgttcccaccaaacaaaccacattaggagatccacacatgatgagt
gatgcaacacaaacagaggaggtcgatcacatgaaatccgaacacagtggtgacggcatg
tcgaaaaagacgcaacaacattacgacaaacatctgcaagaggatcaacagccaagacca
cagcaaccacaggataaaacgacaccacagcaaccaaaatacaatctttcccacaatccc
gtccaatcagggcacagcataccacaaagtagcaaattagacacttttagtcacacttac
agccatgttgaggtgatcggccaatccagcggcttatcagaagtgctaaatcatcactct
gaccaatcagaagttagaaaacatcaccaccaccaccaccaatcagaagcaagtaatcaa
aatatgcaggaaagggaagagcagcaagaaatacaacatcatcttcgtcaccaacaccac
cgacatcatcagcttcaccaacatacaacacaagcagttagccaacaacagacaagcaca
caaaaaacagtgactaaagctcctcccaccaccccctcagccccacagactccgccccct
ctccagcccccacggaagcgccgacggaaacatcggaagaggatgagcaaggcctctatg
agagcaatgataatggtgatgtcctga
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