Megalobrama amblycephala (Wuchang bream): 125255453
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Entry
125255453 CDS
T08212
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03018
RNA degradation
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125255453 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
125255453 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125255453 (lsm5)
03041 Spliceosome [BR:
mamb03041
]
125255453 (lsm5)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125255453 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
125255453 (lsm5)
Spliceosome [BR:
mamb03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125255453 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
125255453
NCBI-ProteinID:
XP_048026687
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All DBs
Position
LG20:complement(10968998..10974584)
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AA seq
91 aa
AA seq
DB search
MAAVAATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagtagcggcaacaaatccttcgcagcttttacctctcgagctggtggataaa
tgcattggctctcggattcacatcgtcatgaagaacgataaagagattgtgggaactctg
ctcgggttcgacgactttgtcaacatggtccttgaggatgtgacagagtttgagatcact
ccagagggaagaagaatcacaaaactggatcagattctgctcaatggcaataacatcaca
atgttgattccaggaggagaaggaccagaagtttga
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integrated database retrieval system
