Megalobrama amblycephala (Wuchang bream): 125255644
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Entry
125255644 CDS
T08212
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125255644 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mamb03400
]
125255644 (msh2)
DNA repair and recombination proteins [BR:
mamb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125255644 (msh2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
125255644
NCBI-ProteinID:
XP_048027007
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Position
LG20:complement(16952057..16967068)
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AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMPEKPDTTVRVFDRNDYYTVHGKDAVFAAKEVFKT
NGVIKNLGTGNKRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKDHDWQISFKA
SPGNLTQFEEILFGSGGGPGEGAAGVVGVRLGTGADGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGILLTDRKKSEFTTKDIVQD
LNRLLKARKGETVSSAALPEMEKQIAMSCLEAVIKYLELLSDEANFGSFKMTTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSTLQDCYRVYQAVGQLPNLVLA
LERYCGKHKVLLHAAFISPLNDLVSDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTLSE
LRENMDRLEKAMQAALSSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVVSFAVVSHAAPVPYIRPKILEKGSGRLFVKAARHPCVEAQDDVAFIPNDVTFTRG
EEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELANFPKHV
IANAREKALELEEFQDISKAGEEAGPEAKKRCLEKQEGEKIIEAFLAKVKSMPVDGMSDE
AVKMELRKLKAEVIGQNNSFVNEIVSRSSKGKLTSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtctatggacagtgcatctgaacatggattcttg
aatttttatttttctatgcctgagaaacctgacaccacagtgagagtttttgatcgaaac
gattactatacggtacacggaaaagatgcggtttttgcagccaaggaagttttcaagacg
aacggagtcatcaaaaacctgggcacaggaaacaagaggttggagagtgtggtcctcagt
aagatgaactttgagtcatttgtgagggacctgctgctggtcaggcagtatcgggtggag
gtgtacaagaatgccagtaagagtagcaaagatcatgactggcagatatctttcaaggct
tctccaggaaacctgacccagtttgaggagattttgtttggcagtggaggaggacctggg
gagggtgcagctggtgtcgtcggggttcgtcttggcaccggggctgacggacagcgtgtt
gtcggtgttggctatgtagacagcacgctcaggaaactcggtgtgtgtgaattcccagac
aatgatcagttttccaatctggaggctcttcttgtgcagatcgggcccaaagagtgtgtg
cttcctggaggagatgcaggtggagaccttgggaaactcaaacaggtggtacagcggggt
ggcattctgctcacagacaggaagaaatctgagttcacaaccaaagacattgtgcaggat
ctgaatcgtctactgaaggcccgcaagggagagacggtgtccagtgctgcccttccagag
atggagaaacagattgcaatgtcttgcttagaagcagtcatcaaatacctggagctcctc
tcagatgaggccaattttggatccttcaagatgaccacatttgacctcaaccagtacatg
cgtctggataatgctgctgtacaggccttaaatctcttccagggttcttctgatgatgct
acaggcacacactccctggcaggccttttgaacaaatgtcgtaccccacaaggacagcgg
ttggtcaaccagtggatcaaacagcctctcattgacaaaaataagatagaagaaagactg
gaccttgtggagacttttgtggaagactctgagctgaggaaaagttgtcaagaggatctt
ctccgccgttttccagacctgaaccggatggcaaagaagttccagcgtcagagctctact
ttacaggactgttatcgggtctatcaagctgtcgggcaactgccgaatctggtgctggca
ttggagagatactgtgggaaacataaggtcctcctgcacgcagcattcatctctcccctt
aacgacctcgtctctgacttctctaaatttcaggagatgattgaaaccacactggacatg
aaccagattgagcatcatgagttcctagtaaaaccctcatttgatcccacattgagcgag
ctcagggagaacatggatcgtttggagaaagccatgcaggccgccttgagcagtgcggct
cgtgagcttgggctggaagcagccaagactgtgaagcttgaatccaatgcacagatcggt
tactttttccgagtcacatgcaaagaagaaaagagccttcgcaacaacaagaaattcaca
actttagatgttcagaagaacggagtgcgattcactaacagtaagctgagctctttgaat
gaagagtacactaaaagcagagaagagtatgaagaggctcaaaacgccatcgtcaaagag
atcatcagcatagccgctggctatgtggatccagtacagactctaaatgaggtgatagct
cagctggatgcagtggtaagctttgctgtggtgtcccatgctgccccagtgccttacatt
aggccgaaaatactagagaaaggatcagggagactctttgtgaaagcagcaagacatccc
tgtgttgaagcccaagatgatgtggcttttattcccaatgatgtcaccttcacaaggggt
gaggagatgtttcatatcatcacaggtccaaatatgggtggtaaatctacatacatccgt
caggtgggtgtgatcgtgctgatggcacagattggctgttttgtgccatgtgatgaggca
gagctgagtgtggtggactgtgtgctcgctcgagtgggtgcgggggacagccaaatcaaa
ggagtgtccacctttatggccgagatgctggagacggctgctattcttcgatcagccaca
gaggattctctcatcattattgatgaattgggcagaggcacatccacatatgatggcttt
ggtctggcctgggcaatctcagagtacattgcgacccgcctcaagtccttctgcctgttt
gccactcacttccatgagctgacggcactggcgcagcaggtgcccactgtccgtaacctc
cacgtcactgccctgaccacagacagcactctcacaatgctctacaaggtgaaaaaaggc
gtgtgtgaccagagctttgggattcatgtggcagagcttgctaacttccctaagcatgtg
attgctaatgcacgggagaaggctttggagcttgaggagttccaggatatttccaaagct
ggggaggaagctggacctgaagccaagaaacgctgcctggagaaacaggagggggagaag
atcatcgaggctttcttggctaaggttaaatcaatgcctgttgacggcatgtctgacgaa
gctgtcaaaatggagctgcgcaaactcaaagcagaggtcatcggccaaaacaatagcttc
gtcaatgagatagtgtcacgttcttccaaaggcaaactgacttcagcctga
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