Megalobrama amblycephala (Wuchang bream): 125256295
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Entry
125256295 CDS
T08212
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04510
Focal adhesion
mamb04512
ECM-receptor interaction
mamb04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125256295 (col2a1b)
04518 Integrin signaling
125256295 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125256295 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125256295 (col2a1b)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125256295 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
125256295
NCBI-ProteinID:
XP_048028125
LinkDB
All DBs
Position
LG21:complement(1585704..1643779)
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AA seq
1488 aa
AA seq
DB search
MILSADSRTLLLFVATLVAFLAVVKCQEENEQDPGSCTQDGQSYSDKDVWKPEPCRICVC
DTGSVLCDDIICEELKDCAKPEIPFGECCPVCAADQPSSPDRLPGAKGQKGEPGDITDVV
GPRGPGGPMGPPGEQGPRGERGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDDKAGAAQMGVMQGPMGPMGPRGPPGPNGSPGPQGFQGNPGEAGEPGSS
GPMGPRGPPGPSGKPGDDGEPGKPGNSGERGPPGPQGARGFPGTPGLPGIKGHRGYSGLD
GAKGESGAVGAKGESGSPGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGSAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGVPGSPGPSGVSGNPGTDGIP
GAKGSVGAPGISGSPGFPGPRGPPGPQGATGPLGPKGQSGDPGLAGFKGEAGPKGEIGSA
GLQGAPGPAGEEGKRGPRGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGAA
GVSGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGVR
GQPGVMGFPGPKGGNGEAGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGAGPQGLQ
GPRGLPGTPGTDGPKGGVGPGGAPGAQGPPGLQGMPGERGTSGIPGPKGDRGDNGEKGPE
GAPGKDGARGLTGPIGPTGPAGPNGEKGESGPAGPSGAAGTRGVPGDRGETGPPGAAGFA
GPPGADGQPGIKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRPGDAGLRGSAGPPGEK
GDPGEDGPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGAPGMTGAAGEPGREGNPGSDGPPGRDGSAGIKGDRGDTGPAGAPGAPGGSGAP
GPVGPTGKQGDRGEAGPKGPSGSPGPAGARGMPGPQGPRGDKGEAGDSGERGQKGHRGFT
GLQGLPGPPGQPGDQGASGPSGPGGARGPPGPVGPAGKDGANGSPGPIGPPGPRGRSGET
GPSGPPGNPGPPGLPGPPGPGIDMSAFAGLSQLEKGPDSYRADQAAEGNLQNDAEVDATL
KSLNNQVESIRSPDGTKKSPTRTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCNMET
GETCVYPKPANIPRKNWWTNKGAERKHVWFGEAMNGGFHFSYGDENLAPNTASIQMTFLR
LLSTEASQNLTYHCKNSIAYMDEANGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCK
RHTGQWSKTVIEYKSQKTSRLPIVDIAPMDIGGAHQEFGVDVGAVCFL
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgtcggcggattcaaggactttactgctatttgtggcaacactagtcgcattt
ttggccgttgtcaaatgccaagaggagaatgaacaagacccaggcagctgcacgcaggac
ggccagtcatatagtgacaaggacgtgtggaaacccgagccgtgtcgcatttgcgtttgc
gacaccggctcggtcctgtgcgacgatatcatctgcgaggagctgaaagactgtgccaaa
cccgagatcccgtttggggagtgctgcccagtctgtgccgctgaccagccttcctcccct
gatcgcttgccaggtgctaagggacaaaaaggggaaccaggagacataacagatgttgtg
ggaccgaggggaccaggcggtccgatgggaccaccaggagaacaagggccgcgcggagag
agaggagagaagggggagaagggaagtccaggcccccgtggaagagatggagagccagga
acccctggaaaccccggccctcctggaccgcccggtccaaacggacccccaggcctcggt
ggaaactttgccgctcagatggctggtggatttgatgacaaagcaggagcagcacagatg
ggagtgatgcagggaccaatgggtccgatgggtccacgaggaccaccaggccccaatgga
tctcctggcccacaaggatttcaaggcaaccctggagaagccggagagcccggatcatcc
ggcccaatgggtcctcgtggccctcctggcccctcaggaaaaccaggagatgatggcgaa
cctggcaaacctgggaacagcggtgaacgtggacctcccggacctcagggagctcgtgga
ttcccaggaacaccaggtctacctggaatcaagggacacagaggatattcaggtctcgat
ggtgctaaaggagagtctggagccgttggggcaaaaggcgagagcggctctcctggagaa
agcggtgctcctggaccgatgggtccacgcggtttgcctggtgaaagggggcgtccggga
ccgtctggagctgctggtgctcgtggaaatgatggtttgcccggctctgctggtcctcct
ggtccagtcggtccgtctggagctcccggtttcccaggatcccccggttcgaagggtgaa
gcaggacctaccggagcccgtggacccgagggagctcaaggaccccgtggagagtcaggc
gtccctggatctccaggaccatctggagtctctggtaaccctggtactgatggcatcccc
ggagctaaaggatcagtgggtgctcctggtatttctggctctcctggttttccaggccct
cgcggccctcctggacctcagggagcgacgggtcctctggggcccaagggacagtctggt
gatccgggtctcgcagggttcaagggtgaagctggtcctaaaggagaaattggtagcgct
ggtcttcaaggtgcccctggtcctgccggagaggaaggtaagcgaggacccagaggagag
cctggtgctgctggacccgtcgggccgcctggagagagaggagctcctggtaatcgaggt
tttcctggacaagatggtctggctggtccaaagggcgctccgggtgagcgtggagctgcg
ggcgtatcggggcctaagggagccagcggagatccaggacggcctggagagccgggtctg
cctggtgcaagggggctgacgggacgtcccggtgatgccggtccacagggcaaagtcggt
ccatctggcgctgctggtgaagacggccgtccaggacccccgggacctcagggtgttcgc
ggtcagccaggagtgatgggattccctggacccaagggtggcaatggtgaggctgggaag
gctggagagaagggactcgctggagctccgggtttgcgtggtctgcctggtaaagatggt
gagacgggtgctgctggaccccccggacctgctggtcccgcaggagagagaggagagcag
ggtcagcccggaccatcgggcttccagggtctgcccggaccccctggtccccctggtgaa
ggaggtaaacccggtgatcagggtgttccaggagaggctggagccgcaggggctactgga
ccccgaggtgagcgtggtttcccaggagagagaggaggtgcagggccgcagggcctccag
gggcctcgtggtcttccaggaactccaggaaccgacggacccaagggcggcgttggtccg
gggggagctcctggtgctcagggacctccgggattacaggggatgcctggagagagaggg
acctctgggattcctggaccaaagggcgacagaggtgacaatggtgagaaaggacctgaa
ggagctcctgggaaagacggcgcaagaggtttaacgggtccaattggtcctacgggtcct
gcaggacccaacggtgaaaagggagaatctggaccggcagggccgtctggagctgctggt
actcgcggcgttcctggtgaccgaggagagactggccctcctggtgctgctggttttgct
ggtccacctggtgcagatggacagcctggcattaagggagagcagggtgaaggtggacag
aagggtgatgccggtgcaccgggccctcaggggccttcaggagctccaggtcctcaggga
ccaactggtgtgtctggaccgaaaggggctcgtggtgctcaaggacctccaggtgccaca
ggtttccctggagccgcaggtagagttggacctcctggtcccaatggtaacccgggtcct
gctggtcctgctggccctcctggtaaagatggtccaaagggtgtgcgtggtgacggtggt
cctcctggaagacctggtgatgctgggttgcgtgggtcggctggtcctcctggcgagaag
ggagatcctggagaagatggtcctcccggtccagatgggccttcaggtcctcagggtctg
gctggtcagcgtggaattgttggactccctggacagcgtggagaaagaggtttccccggc
ctgcctggaccctctggtgagcctgggaaacaaggagctcccggaggatctggagaccgt
ggaccacctggacctgtgggagcgccgggtatgaccggagctgccggagagcctgggaga
gagggcaatcctggatctgatggtcctcctggccgagatggttctgcaggaataaagggt
gacagaggtgacactggtccagctggcgctcctggtgctccaggtggttctggtgcccct
ggtccagtcggacccactggtaaacagggagacagaggagaggccggacccaaaggacct
tctggatctccagggcctgctggagctcggggaatgcctggaccacaagggccacgtgga
gataagggagaagctggcgactcaggtgagagaggacagaaaggacatagaggtttcacc
ggtcttcaaggtctgcctgggcctcctggccagcctggtgaccaaggtgcttctggacct
tctggacccggtggagcaagaggacccccaggccctgttggtccagctggaaaagatgga
gcaaatggttcgcctggacctattggaccccctggacctcgtgggcgttctggagagact
gggccatccggcccccctggaaatcctggaccccctggtcttcctggcccgccgggacct
ggcatcgacatgtctgcttttgctggtctgtctcagcttgaaaagggtcctgattcctac
agggctgaccaagctgcagaaggcaaccttcagaatgatgccgaggtggatgccactctg
aaatccctgaataaccaggtcgagagcattcgtagtcctgacggtactaaaaagagccct
acccggacctgcagagacctgaaactctgccacccagactggaagagtggtgaatactgg
attgatcctaaccagggctgcaccgttgatgctatcaaggtgttctgcaacatggagact
ggcgagacttgcgtctatccaaaacctgccaacatcccacgcaagaactggtggactaac
aagggtgctgaacgcaaacatgtttggttcggagaagccatgaatggtggattccatttt
agctatggagacgaaaatctggcacctaatacagcaagtattcagatgaccttcctaaga
ctgctgtccacagaggcctcgcagaacctcacctaccactgcaagaacagcattgcctat
atggatgaggccaatggcaacctgaagaaggctcttctgctgcagggatccaatgatgtg
gagatccgagctgagggcaatagtcgcttcacatatagtgttcttgaggatggttgcaag
agacacacaggacaatggagcaagacagtaatcgagtacaaatcacagaagacatcacgc
ctacccattgtggacatcgcacctatggatattggaggagcacatcaggagtttggagtg
gacgtgggtgccgtctgtttcttgtaa
DBGET
integrated database retrieval system
