Megalobrama amblycephala (Wuchang bream): 125256343
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Entry
125256343 CDS
T08212
Symbol
ptbp1b
Name
(RefSeq) polypyrimidine tract-binding protein 1b isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125256343 (ptbp1b)
03041 Spliceosome [BR:
mamb03041
]
125256343 (ptbp1b)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
125256343 (ptbp1b)
Spliceosome [BR:
mamb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
125256343 (ptbp1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
125256343
NCBI-ProteinID:
XP_048028228
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Position
LG21:14223544..14246200
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AA seq
564 aa
AA seq
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MDGRLETELYPMGSSYAELDVVHDIAVGTKRGSDELFSCVSSGPYIMSTAANGNDSKKFK
GEIRSPAAPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEEAAQ
TMVTYYSSVTPVIRNHPIFMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSMTLGAVD
PSGMTGPSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFADGLT
AQHAKLALDGQNIYNGCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPALEHHA
VAAFATPGIISASPYAGAHAFPPAFAIQQAAGLTIPGVHGALASLAIPGAAAAAAAASRL
GFPSLPGTHCVMLVSNLNPERVTPHCLFILFGVYGDVLRVKIMFNKKENALIQMSDGTQA
QLAMSHLSGQKLYGRPLRITLSKHTTVQMPREGHEDQGLTKDYSNSPLHRFKKPGSKNYS
NIFPPSSTLHLSNIPPAVVEDDLKMLFASSGALVKNFKFFQKDRKMALIQMGSVEEAIES
LIQFHNHDLGENHHLRVSFSKSTI
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgtctagagactgaattgtatcctatgggatcaagttacgcagaattagac
gttgttcacgatattgcagttggcacgaagagaggatctgacgagctgttctcctgtgtt
tccagtgggccctatatcatgagcacagcagccaacggcaacgacagcaagaagttcaaa
ggtgaaatcagaagtcccgccgccccgtccagagttatacatgtccggaagctacccaat
gacatcaacgaagcagaggtcatctccctcggccttccatttggcaaagtcaccaatctg
ctcatgctaaagggaaagaaccaggctttcttggaaatgaataccgaagaagcagcacag
acgatggttacttactactcctccgtaacgcccgtcatcagaaatcatcccatcttcatg
cagtactccaaccacaaagagctgaaaacagacaactcaccaaaccaagtgagggcacag
gcagcactgcaggcagtaaatgctgtccagacaggtagcatgactttaggtgctgttgac
ccatccggtatgactggccccagccctgtcctgagagtcatcgttgaaaacctcttctac
cccgtgaccttagatgtcctgcaccagatcttctccaagtttggcacagtgctgaaagtg
atcacattcaccaaaaacaaccaatttcaagctctactccagtttgctgatggcctgaca
gctcaacatgccaagctggctttagatggccagaacatctacaacggctgctgtaccctg
cgcattagcttttccaaacttaccagcttaaatgtcaaatacaataatgacaagagccgt
gactacactcgtccagacctgcccacaggggacagccagcctgctcttgaacatcacgct
gtggctgctttcgctactcccgggatcatctctgcctcaccatacgcgggagcacacgcc
ttccctccggcttttgctatccagcaggctgcagggttgacaatacctggggttcatgga
gccctcgcctcactggccattcctggggcagcagcggccgctgcggctgcaagcagactc
ggcttcccctccctccccggcacccactgcgtcatgctggtcagcaacctgaacccagag
agagttacgccccactgcctctttattctcttcggtgtatatggggatgtattgagagtg
aaaatcatgttcaacaaaaaggagaacgctctcatacagatgtctgatgggacacaggct
cagctcgcaatgagccatctaagcgggcagaagttatacggcaggcccctgcgcatcaca
ctgtccaaacacacgactgtccagatgccacgggagggacatgaagaccagggtcttacc
aaagactacagcaactctcctctccatcgctttaagaagccaggctcaaaaaactactcc
aacatctttcctccctcatctaccctgcacctgtctaacatcccacccgccgttgttgaa
gatgacctcaagatgctctttgctagcagtggtgctctcgtcaagaacttcaagtttttt
cagaaggatcgcaagatggctctgattcagatgggttctgtggaggaagcaatcgagtcc
cttatccagttccacaaccatgatctcggagaaaaccaccatcttagggtttccttctcc
aagtccaccatttga
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