Megalobrama amblycephala (Wuchang bream): 125257186
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Entry
125257186 CDS
T08212
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125257186 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125257186 (mtrex)
03041 Spliceosome [BR:
mamb03041
]
125257186 (mtrex)
03009 Ribosome biogenesis [BR:
mamb03009
]
125257186 (mtrex)
03016 Transfer RNA biogenesis [BR:
mamb03016
]
125257186 (mtrex)
Enzymes [BR:
mamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125257186 (mtrex)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125257186 (mtrex)
Spliceosome [BR:
mamb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125257186 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
125257186 (mtrex)
Ribosome biogenesis [BR:
mamb03009
]
Eukaryotic type
Pre-60S particles
Helicases
125257186 (mtrex)
Transfer RNA biogenesis [BR:
mamb03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125257186 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
125257186
NCBI-ProteinID:
XP_048029617
LinkDB
All DBs
Position
LG2:36428240..36470034
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKATPKSAAQAGKTPNKADKPQSDSAAVRKRDADNDGPD
EMVLGKKQKLETVSAEEINLSELMPKVKAEQVETVEGCTHEVVLPANEEYTPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHHVFLSATIPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYVFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDVGDTGGNTGGKWDPKGRRGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKKLVEEVFSNA
TDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMKK
LEEEYNAIRIPNEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVRVKKEDL
DFGWGVVVNFQKKANVKAGGGDIDPLFVVEVLVHCSKDSVKNAATEAAKPAGPGEKGEMQ
VVPVILHLITSISSVRLYIPKDLRPYENRQSMLKSIQEVQKRFPDGIPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYTLCEKKALIAGDIKAAKRELKRARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTSEQATA
LLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDSYLNQFRPHLM
DVVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFATGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaacaggccggttcc
agcaaaaaggccactccaaagtccgctgctcaggcagggaagacgcctaataaagctgat
aaaccgcagagcgattcagcagctgtccgcaaaagagatgcagacaatgatggtccagat
gagatggtgcttgggaaaaagcaaaagctggaaacggtgtcagctgaggagatcaatctg
tcagagctcatgcctaaagtgaaggcggagcaggtggagacagtggagggttgcactcat
gaggtggttcttcctgccaatgaggaatacactccgctgaaaccacgcgttggaaaagct
gctaaggagtaccctttcatactcgaccctttccagcgtgaggccatcctgtgcatcgac
aacaaccagtctgtgcttgtgtcggcccacacatcggcaggaaagacagtgtgtgcggaa
tatgccattgctctggcgctcagagaaaagcagcgagtcatcttcaccagtcccatcaag
gctttgagcaatcagaagtacagagagatgtacgaagagttccaggatgtgggtctaatg
accggtgatgttactattaaccccacagcttcctgtctggtcatgaccaccgagattttg
aggagcatgctgtacagagggtcagaggttatgagggaggtggcatgggtcatctttgat
gagatccattacatgagagactcagagcgtggagtggtttgggaggaaaccatcattcta
ctgccggacaatgtgcaccatgttttcctgtcagccaccattcccaacgctcgacagttt
gcagagtggatttgtcacctccacaaacagccctgtcacgtggtgtacacagactaccgc
cccactccactgcagcactacgtttttccagcagggggcgatggactccatcttgttgtg
gatgagaacggagagttcagagaagacaattttaatacagctatgcaggtcctgagggat
gtgggggacactggaggcaacactgggggcaaatgggaccccaaaggcagaaggggtgga
accaaaggtccttctaacgtcttcaagattgtaaagatgatcatggaaaggaacttccag
ccggtgatcatctttagcttcagtaagaaagaatgcgaggcctatgcactccaagtggct
aaactggatttcaacacagatgacgagaaaaaactggtggaagaagtgttcagcaacgcc
acagactgcctctctgatgaagataaaaagctgccacaggtagagcatgttctgccattg
ctgaagagaggaattggaattcatcatggcggcctcctcccgatcctcaaagagaccatt
gagatcctgttctctgaggggctgctaaaggccttgtttgctacagaaacatttgccatg
gggatcaacatgcctgctcgaactgtgctcttcaccagtgcgcgcaaatttgatggcaaa
gacttccgctggatcacctctggagagtatatccagatgtcaggacgtgccggcagaaga
ggaatggacgagaggggaatagtcattttcatggtggatgagaagatgagccctgcagtg
ggcaaacagttactgaagggttcggcggaccctctgaacagtgcgtttcacctgacctac
aacatggtgctcaatctactacgtgtggaggagatcaacccagagtacatgctggagaaa
tccttctaccagttccagcactatagagccgtgcctggcgttgtggagaagatgaaaaag
ctggaggaggagtataatgcgatacgaatccccaatgaagagagcgttgtgacctactac
aagatccgtcagcaactggccaaactaggcaaagaaatcgaggaatttattcacaaacct
agatactgcttgcccttcctgcagccaggcagactggtcagggtgaaaaaggaagatctg
gattttggttggggtgtagttgtcaatttccaaaagaaggcaaatgtcaaggccggaggt
ggtgatattgacccgttgtttgtggtggaagttctggtccactgcagcaaagacagtgtg
aagaacgcagccacagaagcagccaaaccagcaggcccaggggaaaagggtgagatgcag
gttgttcctgtgattcttcatctcatcacctctattagctctgtgcgtctgtatatcccc
aaagacctgcggccctacgaaaaccgacaaagcatgctcaaatccatacaggaggtgcag
aaacgtttcccagatggcattccgctgcttgatcccatagacgacatgggtatcaaggat
ccagcactgaagaaggtcattcagaaggtggaggcattcgagcacaggatgtacacgcac
cccctgcacagcgaccccaacctggaggccgtttatacactgtgtgagaagaaagcactg
attgcaggggacattaaagcggcgaagcgtgagctgaagagagctcgtactgtgctgcag
atggacgagctgaagtgcagaaagcgtgtgctgcggcgcctgggattcgccacttcctct
gatgtcatcgagatgaaaggccgtgtggcctgtgagatcagcagtgcagatgagctgctg
ctgacagagatggtgtttaacgggctgttcaatgacctgacgtcagagcaggccactgcg
ctcctcagctgcttcgtcttccaggaaaacgctaatgagatgcccaaattgacagagcag
ctggctggaccgctgcgacagatgcaggaatgtgccaagcgaattgctaaggtgtccgca
gaggcaaagctggacgtggacgaggactcttacctgaatcagttccgcccacacctgatg
gatgtggtctacacctgggccaatggctcctcattctctcagatatgcaaaatgaccgac
gtgtttgaaggcagtataatccgctgtatgcgcagattggaggagctcttgaggcagatg
tgccaggcggccaaggccattggaaacacggagctggagaataagtttgcaacgggtata
acgaagattaagagggatatcgtgtttgctgccagcctttacctgtga
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