Megalobrama amblycephala (Wuchang bream): 125258770
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Entry
125258770 CDS
T08212
Symbol
col23a1a
Name
(RefSeq) collagen alpha-1(XXIII) chain isoform X1
KO
K24355
collagen type XXIII alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125258770 (col23a1a)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125258770 (col23a1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125258770
NCBI-ProteinID:
XP_048031773
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All DBs
Position
LG23:complement(26322972..26373064)
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AA seq
485 aa
AA seq
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MGRRGDPGPPGKPGRDGYPGPLGLDGKPGTPGPKGSQGLPGPKGDKGDQGDTGPRMVFPR
YDHGYISADQPSFQRRMLKGDQGQAGPPGPPGPPGAPGARGPPGNTGKDGPRGPPGDSGA
PGRDGIEGQRGLPGKPGEVGNQGYPGPQGPPGPKGEQGEPGPQGDRGTDGLPGLKGDKGD
VGEQGPQGETGRPGDKGTSASGDIIDFNGKLLDAFQAIKTISVSGPPGPPGPPGPPGKEG
PKGELGLPGPAGVDGEKGDKGDTGEPGESGERGEKGEMGLSGPSGVDGQKGEKGDSILED
NLVQMISQPGPPGPPGPPGPPGYMGHRGMPGPKGDPGESIKGEKGEIGASGIQGLQGPQG
PPGSTGLVGLPGTKGEKGKQGEPGLDGFPGIKGDRGERGERGEKGDRGPVGKRGLKGKKG
EQGPPGLDQPCPVGADGCKKEVVEIGHPAPEAPCPLGPDGLPIPGCWHKEQGMLQKLKRK
RLSQP
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgggcagaagaggtgaccctggacccccaggcaaacctgggcgcgacggttacccgggt
ccacttggtctggatggcaaacctggtactcctggacctaaaggaagccaggggctgcca
ggaccaaaaggagataagggtgaccaaggagacactgggccaaggatggtctttcctcgt
tacgatcatggctacatctcggccgatcagcccagtttccaaaggcgtatgctgaagggt
gatcaaggacaagctggtccacctggacctccaggccctcctggagcacctggtgcaaga
gggcccccaggaaacactgggaaggacggcccccgtggcccaccaggagattcaggtgct
cctggacgagatggaatagagggacaaagaggtttaccaggaaaaccgggtgaagttggt
aatcagggttacccaggaccacagggacccccagggccaaagggcgagcagggagagcca
ggtcctcagggtgaccgaggaaccgatggtctgccaggcttgaagggagataaaggagat
gttggagaacaaggaccccagggcgaaacgggccgtcctggtgataaaggcacatcagca
tccggtgacatcattgacttcaatggcaaactcttagatgcctttcaggccatcaaaacc
atcagtgtctcgggaccacctggccctcctggacccccgggaccaccaggaaaagaaggt
ccaaagggtgaacttggtttgcctgggcctgctggggttgatggcgaaaagggtgataag
ggagacactggagagcctggtgaatctggagagaggggtgaaaaaggagaaatgggcctc
tctggtccctctggagtggatgggcagaaaggagagaaaggagactcgatactagaggac
aatctagttcagatgatttcacagccgggaccaccagggcctccaggtccgccaggacca
cctggatacatgggtcatcgtggcatgccaggccccaaaggtgatccaggggagagtatt
aaaggagagaagggagaaatcggtgcttcaggaatacaaggccttcagggtcctcaaggg
cccccgggttcaacaggattagttggtcttcccggcacaaagggtgaaaagggaaaacaa
ggggaacctggattagatgggtttcctggcattaaaggagacaggggtgagcgaggggag
agaggagagaagggagatcgcggtcctgtcggaaagagaggcctcaagggaaagaaaggc
gaacagggaccgccgggtctggaccagccctgtcccgtgggagctgatggatgtaaaaaa
gaggtggtggaaatagggcatccggcccctgaggccccctgtccactgggtcccgatgga
cttccaataccaggttgttggcacaaggagcagggaatgcttcagaaactcaagaggaaa
cgtctctcccagccttga
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