Megalobrama amblycephala (Wuchang bream): 125258892
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Entry
125258892 CDS
T08212
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03013
Nucleocytoplasmic transport
mamb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125258892 (upf3b)
03015 mRNA surveillance pathway
125258892 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125258892 (upf3b)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125258892 (upf3b)
mRNA cycle factors
P-body specific factors
125258892 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
125258892
NCBI-ProteinID:
XP_048032048
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All DBs
Position
LG23:complement(10332477..10337167)
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AA seq
464 aa
AA seq
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MKEDKENTRPREKKVEIKCDDNEKAEKPNKEKKEAMTKIVIRRLPPSLTKEDLEEQLQPL
PELDYLEFFSSDTSLFPHLFARAYLNFKNQDDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKVAKKRSKKKDAKSGTIEDDADYKKFLEFYNGDEEKFPSNPETLLEEIEAKTKELSA
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKLKKGE
KASDKDKDQPKDDQPKIKLLRKPEKADNGDAEKPKDKPKKQDREKQKEDRPPGGGEMKKR
QNGEHREEKGPKSEDSGHKDYRERDGDRDRDRDRDRERRQKEKERIRRQDEERRRRRERQ
DGENTYKKREDEGKKDKERVWERRKNENTGESSVNAHPEKPSKDNKKEDSAKRDRLRNKD
RPAIQLYQPGARSRNRGGGAGGDGQAADRRAERESKNSQEKVAE
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggaaaacacgcgtcccagagaaaagaaagtggaaataaagtgtgac
gacaacgaaaaagcagagaagccaaataaagagaagaaggaggctatgacaaagattgtg
attcgacgtctacctccgagtctaactaaagaagacttagaggagcaactgcagcctctt
ccagagctggattacctggagtttttctctagtgatactagtcttttccctcatctgttt
gcaagagcatatctgaatttcaaaaatcaagatgacatagttctcttcagagaccgtttt
gacggctatgtctttattgataatcgaggacaagaatatccagccattgttgagtttgca
ccattccagaaagttgctaagaaaagaagcaagaagaaggatgccaaaagtggaacaatt
gaagatgatgccgattacaaaaagtttttggagttctacaatggcgatgaggaaaaattt
ccttctaatccggagactttacttgaggaaatagaggccaagacaaaagagctcagtgct
aaaaaaacaacacctctcttggacttccttaagaataaacagaggattcgagaagagaag
aaggaagagaggagacggagagagctagagcgcaaacgcttacgagatgaagaacggcgt
aagtggagagaggaggacagaagaaaaagaaaagaggctgagaaattgaaaaaaggagaa
aaggcatctgataaggataaggaccaacctaaagatgatcagccaaaaatcaagctctta
agaaaaccagagaaagcagacaatggtgatgctgagaagccaaaagacaagcctaagaaa
caagacagagagaaacagaaggaagatcgacctcctggaggaggagagatgaagaagaga
cagaatggtgaacacagagaggagaaggggcccaaatcagaggatagtgggcataaagat
tacagagaacgtgatggagaccgagatagagaccgggacagagacagagagcgaagacag
aaagaaaaagaacgcatcagaaggcaagatgaagaacggaggaggagaagggaacgtcag
gacggagaaaacacctacaaaaagagagaggacgaagggaagaaggacaaggagcgcgtt
tgggagagaagaaagaatgaaaacaccggagagtcctcagttaatgctcatcccgaaaag
ccatcaaaggacaacaaaaaggaagacagtgccaaaagggaccgtctgagaaataaggat
cggcctgcaattcagctgtaccagcccggggcgaggagccgtaaccggggaggaggagca
ggaggagatgggcaggcagcggacaggagggctgagcgggagtctaagaattctcaagag
aaagtggccgagtga
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