Megalobrama amblycephala (Wuchang bream): 125258939
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Entry
125258939 CDS
T08212
Symbol
pcdh1b
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125258939 (pcdh1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mamb01009
]
125258939 (pcdh1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mamb04515
]
125258939 (pcdh1b)
Protein phosphatases and associated proteins [BR:
mamb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125258939 (pcdh1b)
Cell adhesion molecules [BR:
mamb04515
]
Cadherins
Protocadherins
125258939 (pcdh1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
DUF7171
Glycophorin_A
He_PIG
Motif
Other DBs
NCBI-GeneID:
125258939
NCBI-ProteinID:
XP_048032136
LinkDB
All DBs
Position
LG23:12986989..13170472
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AA seq
1225 aa
AA seq
DB search
MTVRVNRNFTVNRPTMCQSANVMWSRWSAMLVWILLLLCCSANVVNTIIYQVTEEQPPNT
LIGSLAADQGLPDTGHLYKLEVGAPYLRVDGKTGDIYTTETPIDRETLKDCRNLFEGDPC
FLEFEVSITDLMKGTGPRLIEGRIEILDENDNTPQFSSPVLTLSIPENTHVGVLFAIPVA
TDKDSGSNGIADYALTTGPEAANLFSLQVAQDSDEKLPQLIVLGNLDREQRDSYDLNIKV
VDGGSPPRQSSALLRITITDANDNVPRFEKTHYEGELPENSPVGHSVLQVKANDSDMGPN
GEVTYSLHQAPPAVQRLLSIDRNTGTIFVKGLVDREEISMLKFYVQAKDNGPQAKSSKSL
VTITVKDQNDNAPLIRIRGIGLVTHEDGVANISEDMPVGTAVALVEVSDRDEGENAVVTC
VVAGDVPFQLRSASETGNDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSL
RVQVTDMNDNSPVFSPSLYQVEFPEENQPGDKVLDVLATDADSGTNAELTYSITGGSVPE
GLFEINPNTGEVRVMSQLDREQLDHYQFLVAAADKGVPSLRGTATVVVKVLDRNDNDPKF
MLNGYSFSVQENMPPLSPVGMVTVTDYDEGDNAHVQIFVEPDNGKFMIQNGTYTILSTIS
FDREKESTYSFRLKAVDGGDPPRSSYVGITINVLDENDNAPYVTKPSNSSYKFLDPRTSP
ETHVERVEAEDIDIGSNSELDFSIVGGNPHGLFRISSEGEITLAKEFTSKHIGLHRLVVK
VKDRGTPVRHTTALVHIYVNETIGNVSHVEGLVGHSLYTPLEMDIAGDPDYSHDQHSNII
FGVLGGLFVVFLIIVVAVIIRRVLKENKSGYQAGKKETKDLYAPKPGPKSNKNKKAKKSK
APKPANPSEEDEGGSLQKGLKFNLMDDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPS
IQLQPQSPSASKKHQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANSSKYSTKQLPHR
RVTFSTANQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGS
IGEMEHPENDLRPLPDVAMTGKCTRECTEYGHSDSCWMPGQPSPNRTKSAKSGPKLSTFV
PYQEREGQERLMADSSSKPHGEERSGGGSNKVASIRFLPPYTSAYSTGGDSGKDCPREEI
PLSQTADYVPATTPSSQGSKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttcgagtgaaccgaaacttcaccgtcaacagaccgacgatgtgccagagtgcc
aatgtgatgtggtcacggtggagtgccatgctagtgtggattttgcttctcctctgttgc
tctgcaaatgtagtcaacaccatcatctaccaggtgaccgaggagcagccgcccaacacc
ctaattggcagcttggcagctgaccagggcctgccagacacaggccacctttacaagctt
gaggtgggtgctccttacctccgtgtggatggcaaaacaggggatatctacaccacggag
accccgatcgatcgtgagactctcaaggactgtcgcaacctttttgagggcgatccttgt
ttcctagaatttgaggtgtctattacagatctaatgaaaggcacaggacctcggctcatt
gaaggccgcatcgagatcttggatgagaatgacaacacaccacagttctcttcccctgtc
ttgacattgtcgatccctgagaacacgcacgtgggtgtgctattcgcaattcctgtggcc
accgacaaggattctggaagcaatggcattgcagattatgcgctaacgaccggccctgaa
gctgccaaccttttcagcctgcaggtggcacaagactcagatgagaaattgccacaactt
attgtattgggcaacctggatagagagcagcgagattcatatgacctcaacataaaagtg
gtcgacggcggctctccacctcgccagagtagtgccctgcttaggatcaccattacagat
gcaaatgacaatgtacccagattcgagaagacacactatgagggtgagctgccagaaaac
agcccagtgggtcattctgttctacaagtgaaggccaatgactctgacatggggcccaat
ggagaggtgacctacagcctccaccaggcaccaccagcagtccaaaggcttcttagtatt
gaccgcaacacaggcaccatttttgttaaggggctggtggatcgtgaagaaatcagcatg
ctcaagttctacgtccaagctaaagacaatggtccccaagcaaaaagctccaaatccctt
gtgactatcacagtaaaggaccaaaatgacaatgcgcccttgatcaggatccggggcatt
ggtcttgtgacacatgaagatggtgttgctaacatatcggaggacatgcctgtgggcaca
gctgtggctctggtggaggtatcagatcgtgatgagggcgaaaatgcagttgtgacctgt
gtggttgcaggggatgtcccattccagctgcgttcagctagcgaaactggcaatgaccgc
aagaggaagtacttcctccagacaaccacgctactggactatgagcggatcaaagactac
aggattgaaatcgtggcagtggactctggcaaccctgcactatccagcacaaattccctg
agggtgcaagtgacagacatgaatgacaattccccggtcttctcgccatccttgtaccag
gtagaatttcctgaggagaaccagccaggtgacaaggttttggatgtgttagccacggat
gctgacagtgggactaatgcagagctgacatacagtatcactggtggatcagtccctgag
ggactctttgaaattaaccctaacacaggagaagtacgtgtcatgagccagttggaccgt
gaacaattagatcactatcagtttctagttgcagcagctgataaaggtgtaccaagcttg
agaggaactgccactgttgttgttaaggtgctcgacaggaacgacaatgaccctaaattt
atgctcaatggttacagcttttcggtccaagagaacatgcctccccttagtcctgttgga
atggtaacagtcacagattacgatgagggcgacaatgctcatgttcaaatctttgtagaa
ccagacaatggcaagtttatgattcaaaatggaacgtacaccatcctttcaactatttcc
tttgacagggaaaaggagagtacctacagtttccgactgaaagctgttgatggaggtgac
ccaccacgttcctcctacgttggcattactattaatgttcttgacgagaatgacaatgct
ccttacgtcaccaagccctcaaactcgtcatacaagttcttggatccccgcaccagccca
gagacccatgtagaacgcgttgaggcagaggacattgatattggttcaaattcggagctg
gatttcagtattgtagggggcaaccctcatggcttgttccgcatctcttcagaaggtgag
attacgttggctaaagagttcacatccaaacatattggtctacaccgtctggtagtaaaa
gttaaggacagaggcacaccggtacgccacacgactgcactggttcacatctatgtcaac
gagaccattggcaatgtctcgcatgtcgaaggacttgttggacacagtctttatacccca
cttgaaatggacattgcaggagatccagattattctcatgaccagcacagtaacattatc
tttggagtcttgggtggcctttttgtggtctttctaatcattgtggtggcggtgatcatc
aggcgtgtgctgaaagagaataaaagtggctaccaggctggcaagaaggagaccaaagac
ctctatgctcccaaaccggggcctaagagcaacaagaacaagaaggcaaagaaaagcaaa
gctccaaagcctgccaacccatctgaagaggatgaggggggaagtcttcagaaaggccta
aagtttaacctcatggatgatagcgtcaacgatagccctaggattcacctgccgctcaac
tacccccctggcagcccagacctggggcgacactatcggtctaattctcctctgccatcc
attcagctccaacctcagtcaccttctgcctcaaagaaacaccaggcagtgcaggacctg
ccggccaccaacacctttgtaggaaccggggacaacaactcaacaggctcagaccagtat
tcggattacagctacaaggccaactcttcaaaatatagcaccaaacagctcccgcatcgc
cgagtgaccttctccacagccaatcaggcacaagatctgcaggatccctctcagcacagt
tactatgacagtggtctggaagaatcagagacacccagcagtaagagctcttcagggccc
cgtatcgggcccctcgccctacctgaagaccactatgaacgcaccaccccggacggcagc
atcggagagatggaacaccccgagaacgatctgaggcctctacctgacgtggccatgacg
ggaaaatgcacccgcgagtgtacggaatacggccactccgattcctgctggatgcccgga
cagccctcacccaaccgcaccaagagtgccaagagtgggcccaagctctccacctttgtg
ccttaccaggagagggagggtcaggagcgtctgatggctgacagcagctctaagcctcac
ggagaagagcggagtggaggcgggagcaacaaagtggccagcattcgctttttgcctccc
tacactagtgcctattctacaggcggtgactccggcaaggactgcccccgggaggagatc
cccctgagtcagacagccgattacgtccctgccactacaccctccagccaaggctccaaa
agagaaatctacctgtga
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