Megalobrama amblycephala (Wuchang bream): 125259028
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Entry
125259028 CDS
T08212
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125259028 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamb03021
]
125259028 (polr1a)
Enzymes [BR:
mamb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125259028 (polr1a)
Transcription machinery [BR:
mamb03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125259028 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
CDC45
Motif
Other DBs
NCBI-GeneID:
125259028
NCBI-ProteinID:
XP_048032304
LinkDB
All DBs
Position
LG23:complement(1904787..1931163)
Genome browser
AA seq
1697 aa
AA seq
DB search
MQFSKETPWRRLEGMSFGMYSAEELRKLSVKTITNSLLLDNVGSAAPNGLYDLALGPADR
KEICSTCMQDFDSCPGHFGIIELPLTVYNPLFFDKLFLLIRGSCLMCHTLKCPRAAILLL
LGQLKLLDVGALREVYELENVLNQFLNVNAQPTTLEMQEVLDGFVNPILKANKDKKHLAP
VKHICEKKSSLINNFWKTQMGSRKCMNCKTGKDIVRREHNSKIIIFKAMNAKDLEQPDDT
QLTKRGFLTPSLAREHILKLWQIEGLFLKHLISSEKGFSPELFFLDLLVVPPCKYRPINR
LGDQMFTNGQTVNMQSVLKDNFTIQKLLALIASEKINDTEDTQTEIDKSGEAVESSEMDQ
SFLIGIPGLTLTDKLYNVWIRLQSHVNIVFDSDMDKLITEKFPGIRQLLEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPDVHP
GASMVINEDGSRTILSNNLTQREAVAKQLLTPSTGLHRIPMKIVNRHIKNGDVLLLNRQP
TLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVST
DQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALIYRGLTDKMGRVKLLRPA
LIKPVPLWTGKQVVSTLLLNVIPENHIPLNLTGRAKIPSKAWVKEPPRSAPGYKPESMCD
SQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRG
FTLGVEDILVKDGANKQRRKIIQKSVTCGSKALQAAFNLPASAGDAEARERWQDAHLNSD
QRDFNMVDLKFKEEVNEVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTVNTMQISC
LLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREG
LVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQP
RQFPFIKDNYEVIRKSKCLDEVLAKMDSQATFNHLKAIRRWKAKRERVSPREGAFLLYSQ
KKLSHVKSQVGYQELDSGRKAATLQLLERWRALDDSGRMKYLKKTSRCPDPCLSLYRPDI
CFGSVSETFDSIVESYLEQFNIKQEFQTSAEIVDSDRLRHLLQLKWQRALCDPGEAVGLL
AAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIAGSKIKTPMMSIPVRMNKKA
LKQVKTLRKKITRVCLSEVLHKVDVIETFRYVEKGKLSEKSRVYKITFHFLPPERYQQDK
LLTPNKILHYMEQKFFRMLLETIKRLNSKLSAMGKVDTRKATPSDADRPVAGGVEGAAEV
EADEDAGNENIVDDEANEGDADATDSSRKEKQEEEVDYESEEGEGEEGSDQEQEDVAENG
QKDAGDAQEMAEEESGESPNSSEQPLETSQETSQESMRINTVLKLSPAMEEYTYDTENGL
WCELTLVLPVTTVHFDLTSVVVKQAQNSVIMETKGITRCLLNEVTTKDGSKEMVLNTEGI
NMQEMFKHADILDLNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSL
VADYMCFEGVYKPLNRIAIQSSSSPLQQMTFETSFKFLKQATMLGSDDKLCSPSACLVVG
KVVKGGTGIFELKQPLQ
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttctaaagaaacaccatggaggcgattagaaggcatgtcgtttggcatgtat
tccgcggaggaattaaggaagctgagtgtgaagactatcactaactccctgctgctggat
aatgtgggcagtgccgctccgaacgggctgtatgacctggcgctgggtcctgctgataga
aaagagatctgctccacctgcatgcaggacttcgacagctgtccgggacacttcggcatc
atagagctgccgctgaccgtctacaaccctctgttctttgataaattatttttgctcatc
cggggctcatgcctgatgtgtcacacgctgaagtgtccaagagcggctatccttttactg
ctgggccagctgaagctcctggacgtgggtgcgttgagggaggtgtacgagctggagaat
gtgctcaatcagttcctgaatgtcaacgctcagccgaccacattagaaatgcaagaagtt
ctggatgggtttgttaatcccatcctcaaagccaataaagacaagaagcacctggctcct
gtcaaacacatctgtgagaaaaagtccagtctcattaacaatttctggaaaacacaaatg
ggctcaaggaaatgtatgaattgcaaaaccgggaaggatatcgttcgcagagaacacaac
agcaaaatcatcatctttaaagcgatgaacgcaaaagatttagagcagcccgatgataca
cagctgaccaagcgtggattcttgactccaagtttggcgcgagagcatatcctcaaactc
tggcagatagaaggtttgttcctgaagcatctgataagttcggagaaaggcttcagtcct
gaacttttcttcttggatttgctggtggttcctccatgcaagtacaggcctattaatcgt
ttgggagaccagatgttcaccaacggacagactgtgaacatgcagtccgtgttaaaggat
aatttcaccattcagaaattgcttgcattaatcgcttctgagaagattaacgatactgaa
gacacgcagacagagatagataagtctggtgaagccgtcgagagcagtgagatggatcag
tccttcttaataggcatcccgggactgactctcacagacaagctctacaacgtctggatc
cgcctgcagagtcacgtcaacatcgtgtttgacagcgacatggacaaactgataactgag
aagtttccaggcattcgtcagctcttggagaagaaagacggcttgttcaggaaacacatg
atgggaaagcgtgtggattacgctgcacgctctgtcatttgtcctgatatgtacatcgga
accaatgagattggaataccaatggtttttgctaccaagttgacgtacccgcagccggtg
acgccctggaacgtgaaggaactcaggcaggcggtgctgaacggacccgacgtccaccct
ggagcctctatggtcattaatgaagacgggtctcgcaccattctcagcaacaacctgacc
cagagagaagctgtggccaaacagctgctgacccccagcaccggcctgcacaggataccc
atgaagattgtgaatcggcacatcaagaatggagatgtgctgctgttaaaccgtcagccc
actctgcacagaccgtcaattcaggcccactgcgctcggatcctgcccggagagaaagtg
ctccgcttgcattacgctaactgtaaggcctacaacgctgactttgatggagacgagatg
aacgctcacttccctcagagtgagctgggccgagccgaggcctacacgctagtgagcaca
gaccagcagtacctagtgcccaaagatgggaagccgctggccggcctgattcaggaccac
atggtgtctggcaccagcatgaccatccgcggctgttttttcacgcgggatcagtacact
gcgctcatctacagaggcctgacagacaagatgggcagagtgaagctcctccgtcccgcg
ctcattaaacccgtgccgctctggacaggaaagcaggtggtgtcgacccttttgctgaat
gtcatcccggaaaaccacatccctttaaacttgacgggaagagcgaagattcccagtaaa
gcctgggtgaaggagcctcccagatctgctccaggatacaagccggagtccatgtgtgac
tctcaggtggtcattcgtcagggagagctgctggtgggcgttctggataaagctcactat
ggcagctcagcgtacggtctggtgcactgctgctacgagctctacggaggagagaccagc
ggaaaactgctcagctgtctggctcgactcttcactgcctacctgcagctttaccgcggc
ttcaccttgggtgtggaggacattctagtaaaagatggagccaacaaacaaagaaggaaa
attatccaaaagtcagtcacatgtggctccaaggctcttcaggctgcgtttaacctgccc
gcatccgctggagacgctgaagccagagaacgctggcaggacgcacatctgaactcagac
cagagagatttcaacatggtggacctgaagttcaaagaggaggtcaatgaagtgaacaac
aacatcaacaaggtttgcatgccactgggtctccatcgctccttcccagaaaacaacctt
cagctgatggtgcagtccggagccaagggatctactgttaacactatgcagatctcctgt
ttattgggtcagattgagctggagggccgccgaccaccgctgatgccttctgggaagtcc
ctgccctgctttcagccctacgaaccacagccgcgctccggaggattcgtgactggcaga
ttcttgacagggatcaaacctcctgagttctttttccattgcatggctggtcgtgaaggt
cttgtggacactgctgtcaaaaccagtcgatctggttatctgcagaggtgtgtgatcaag
catctagaaggtcttgtggtccagtatgatctgactgtgcgggacagtgatggaagtgtg
gtccagtttctttacggagaagatgggctagacatccccaagacccagttcctacagcca
cggcagttccctttcatcaaagacaactacgaggttattagaaagtctaagtgcttggat
gaagttctggctaaaatggactcacaggccacgtttaatcaccttaaagccattaggaga
tggaaagccaagcgtgaacgtgtttcacccagagagggagccttcctgctctactcgcag
aagaaactgagccacgtgaagtctcaagtagggtaccaggagctggacagcgggagaaag
gcagccactctacagctgttggagaggtggagagctctggatgactctggccgtatgaag
tatttgaagaagacgtctcgttgtccggacccgtgtctgtctctttaccggccggacatc
tgcttcgggtcagtgtctgagacgttcgactccattgttgagtcctacctggagcagttc
aacatcaagcaggaatttcagacgtctgctgaaatcgttgactcagatagattgaggcat
ctcctgcagctgaagtggcagcgagctctgtgtgaccccggagaggccgtgggtctgctg
gcggctcagagcatcggagagccctccacccagatgacccttaacaccttccacttcgcc
ggcagaggagagatgaacgtcaccctgggaattcctagattaagagaaatactcatgatc
gcgggttcgaagatcaaaacccccatgatgagcattccagttcggatgaacaagaaagcc
ttgaagcaagtcaagaccctgcggaagaagataacacgcgtgtgtttatcagaggtgctt
cacaaggtggatgtgatagaaaccttccgttacgtagagaaaggaaaactaagcgagaaa
tcacgagtctataaaatcacattccacttcctgcctcctgagcgataccagcaagacaag
ctgctcacccccaacaagatccttcattacatggagcagaaattctttcgcatgctgttg
gagaccattaagaggctgaactctaaactgtcagctatgggaaaagtggacacgcgcaaa
gccacgccgagcgacgccgatcgaccggtggcggggggtgtcgagggggcggcagaggtt
gaggccgatgaggatgcaggaaatgaaaatattgtggatgacgaggcgaatgaaggcgat
gctgatgctacagattccagtagaaaggaaaaacaagaagaggaggtggactacgagagc
gaggagggtgagggtgaggagggcagtgatcaggaacaggaggacgtggccgagaacgga
cagaaggacgcaggagatgctcaggagatggctgaggaggagtctggtgagagtcccaac
agctctgaacagccgctggaaacgtcacaggaaacgtcacaggaatcgatgaggatcaac
actgtgcttaagttaagccccgctatggaggagtacacatatgacacagagaacgggctg
tggtgtgagctgaccctggtcctgcccgtcactacagtgcactttgacctcacgtcagtg
gtggtgaagcaggctcagaactctgtcatcatggagaccaaaggaatcacacgctgcttg
ttaaacgaagtcaccacaaaggacggttcaaaagagatggtgctcaacaccgagggcatc
aacatgcaggagatgttcaaacatgctgatatcctggacttgaaccggttatactccaac
gaggttcatgctatggccaacacgtacggcatcgaggtggccctgcgagtcattgagaag
gagattaaagatgtgtttgccgtctacgggatcgaggtggacccgcgccatctctctctc
gtggccgactacatgtgctttgagggggtgtacaagcctctgaaccgaatcgccattcaa
tccagcagctccccgctgcaacagatgacctttgagaccagtttcaagtttctgaagcag
gccacgatgctgggttctgatgataaactctgttcgccgtcggcttgcttggtcgtagga
aaggttgtgaaaggaggaaccggcatcttcgaactgaaacagccgttacagtaa
DBGET
integrated database retrieval system
