Megalobrama amblycephala (Wuchang bream): 125259104
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Entry
125259104 CDS
T08212
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03020
RNA polymerase
mamb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125259104 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
125259104 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mamb03021
]
125259104 (polr2b)
03400 DNA repair and recombination proteins [BR:
mamb03400
]
125259104 (polr2b)
Enzymes [BR:
mamb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125259104 (polr2b)
Transcription machinery [BR:
mamb03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125259104 (polr2b)
DNA repair and recombination proteins [BR:
mamb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125259104 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
125259104
NCBI-ProteinID:
XP_048032452
LinkDB
All DBs
Position
LG23:complement(25518148..25531339)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaagacgaagatatccagtatgatgaagatgatgatgaaatcacccctgat
ctgtggcaggaggcctgttggattgttatcagctcatattttgatgaaaaaggcttggtg
cgacagcagctggactcatttgatgagttcatccagatgtctgtgcagaggattgtggag
gatgctccacccattgacctgcaggctgaggcccagcacacatctggagaggtggaggaa
ccgcctcggtacttgctgaagtttgagcaaatctacctctccaaacccactcactgggaa
agagatggtgctccctcacctatgatgccaaacgaagccagactccgaaatctcacgtat
tctgcccctctgtatgtggacatcacaaagaccatcataaaggatggggaagagcaacaa
cagacgcagcatcagaaaacgtttatcggcaaaattcccatcatgctccgttctacatac
tgtctgctgagtggcctgacagatcgtgatctttgtgagttgaacgagtgcccactggac
cctggaggctacttcatcatcaatggttcagagaaggtcctgattgctcaagagaagatg
gccactaacacagtgtatgtgtttgccaagaaagactccaagtatgcttacactggagag
tgcaggtcatgtctggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gcccgtggaggacagggagtaaagaaaagtgccatcggccagaggattgtatccactctg
ccgtacatccggcaggaagttcccatcataattgtgttccgtgctttgggatttgtgtct
gatagagacattctggaacacatcatctatgactttgatgatcctgagatgatggagatg
gtgaagccatctttggacgaggcatttgtgattcaggaacagaatgtggctctgaacttc
attggctccagaggcgctaaacctggtgtcaccaaagagagaagaatcaaatatgctaaa
gaggttttgcagaaggaggtgttgccacatgttggtgtatcagatttctgcgagactaag
aaagcatattttctaggttacatggttcacagactactgttggctgctctgggcagacga
gagctggatgacagggatcactatggcaacaagaggcttgatcttgctggacccttgctt
gcgttccttttcagaggaatgtttaagaacctgctgaaggagatcaggatctatgcacag
aagtttattgacagggggaaggactttaatcttgagctggccattaagacccgcatcatt
tctgatgggctcaagtactccctggccacaggcaactggggggatgtgaagaaagcccat
caggccagagctggagtatctcaggtgttgaacaggttgactttcgcctccactctttcc
cacctgcgccgcgtaaactcgcctataggacgagatggcaagctggccaaacccaggcag
cttcataacacactgtggggtatggtgtgccctgctgagacccccgagggccatgctgta
ggtttggtgaagaatctagctcttatggcctacatctctgtgggatctcagccgtccccc
atccttgagttcttagaggagtggagcatggagaacctggaggaaatctcccctgctgca
attgcagatgcaactaagatttttgtgaatggttgctgggtgggtattcacaaagaccct
gagcagctgatgaacactctacggaagctgaggagacagatggacatcatcgtgtctgag
gtgtcaatgatcagagatattcgtgagagggagatcaggatctacaccgacgctgggagg
atctgccgtccactgcttattgtggaaaaacagaaacttctgctgaagaggcgacacatt
gaccagctcaaagagagagagtacaacaactacagttggcaggacctggtagccagtggt
gtggttgaatatattgacacactagaggaggaaactgtaatgttggccatgacccctgat
gaccttcaggagaagggtgtggcttattgctccacctacacacattgtgagatccaccca
tccatgattttgggtgtctgtgcatccattattcccttccctgatcacaaccagtctccc
agaaacacgtaccagtctgctatgggtaaacaagctatgggagtttatatcaccaacttc
catgtgcgtatggataccctggcacatgtgctctactacccccagaaacccttagtcacg
actcgttccatggagtatctgcgtttcagagagctgccagcaggtatcaattccattgtg
gctattgcatcatatactggatacaaccaggaagattctgtcatcatgaaccgttcggct
gtggatcgtggattcttcaggtctgtgttctaccgctcgtacaaggaacaggaatctaag
aaaggctttgaccaggaagagatctttgagaaacccaccagagagacttgtcaaggcatg
cgacatgccatctatgacaagttggatgatgatggtttgattgctcctggtgtgcgtgtg
tctggtgaggacgtcatcattggcaaaacagtaacacttcccgagaatgatgatgagctg
gatagcacgaaccgtcgctacactaagagagattgcagcacgttcctgcgcaccagcgaa
acgggaatcgttgaccaagtcatggtcacgctaaaccaggagggctacaagttctgcaaa
atcagagtccgttcagttcgtataccacaaatcggagacaagtttgctagtcgtcacggt
cagaagggtacctgcggtatccagtacagacaagaggacatgccgttcacatgtgaagga
atcaccccagatatcatcatcaaccctcacgccatcccttccagaatgacagtcggccat
ttgatcgagtgtctgcaagggaaggtgtctgctaacaaaggggagattggtgatgccacg
ccattcaatgatgctgtgaatgtacaaaaggtctccaacctgctgtcagaatacggttat
catctgagaggcaatgaggttttgtataatggcttcactggccgtaagcttacctcacag
atcttcatcggacccacatactaccagcgtctaaaacacatggtggacgataaaattcac
tccagagcccgtggtccggtccagatcctcaacagacagcccatggagggtagatcacgt
gatggtgggctgcgttttggagagatggaacgtgactgtcagattgctcatggtgccgct
cagttcctgaaagagaggctttttgaggcctctgacccataccaggtccatgtctgcaac
ttgtgcggcctcatggccatcgcaaacacccgcacgcacacctatgaatgcaggggctgc
cgcaacaagacacagatatctttggtgaggatgccgtacgcttgtaagcttttattccag
gagctgatgtctatgagcattgccccacggatgatgaccagctaa
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integrated database retrieval system
