Megalobrama amblycephala (Wuchang bream): 125259377
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Entry
125259377 CDS
T08212
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125259377 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mamb01009
]
125259377 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mamb04515
]
125259377 (pcdh1a)
Protein phosphatases and associated proteins [BR:
mamb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125259377 (pcdh1a)
Cell adhesion molecules [BR:
mamb04515
]
Cadherins
Protocadherins
125259377 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
125259377
NCBI-ProteinID:
XP_048032956
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All DBs
Position
LG2:complement(43127665..43232621)
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AA seq
1190 aa
AA seq
DB search
MDLPVVLFLLWGLLLDLLSGAVGGILYRVHEEQPPSTLIGSLAADQGLPDTGHLYKLEVG
APYLRVDGKTGDIFTTEIPIDRETLKDCRNKGKPCFLEFEVSVTDLIQNQSPRLIEGRIE
VQDINDNTPQFPSPVLTLSVPENTHMGSLFSIPLATDKDTERNGVADYTLTAGPEAVALF
GLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPPRYSSALLRVVIADANDNA
PTFEKSSYEAEVAENSPIGHSVLQVKANDSDMGPNGEIEYTLHQAIDPVPKLLRIDRSSG
IIYVKGPLDREEINNLKFYVVARDKGPSPKSSKTYVSIDVTDQNDNAPAVEIRGIGLVTH
SDGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSVDNKRKYF
LQTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDTNDNSPIFSPTLFEVEFAE
ENQPGEKVVDVVASDADSGTNAELVYSIIADSSTRGLFEIDPSSGEVRARSPLDREHKER
YEFRVTAADKGVPSHRGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTVQ
DMDEGENAQVQLSVEPDVGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGDPPRSS
YVGVTINVLDENDNAPVVTKPSNSSFMRLSPMAAPDSVVEVVEAEDIDSGSNAELVYSIA
GGNPHDLFYISPSNGEITLTKELTRKHSGLHRLVVKVSDRGKPTRHAIALVHIYVNETIA
NVSHVEALVGHSLYTPLDMDIAGDPDYGLAAQRSNIVYGSLAGVAGVVTVIVVVVFIRHR
LQREAKSGYQAGKKETKDLYAPKQGPKSGKGRKGKKGKPPKSPKPLGEDEEVSLQKSLKF
NLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQELPAAN
TFVGTGGDDNSTGSDQYSDYSYKTNQPKYSTKTLPHRRVTFSTANPVQDQQDSSQQSYYD
SGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPETDIRSLPDVAMTGNC
SQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSVRLGGEENRP
RLPPSRSAYSSSDHTPSDHAPLEEVPLSVTSEFPPTSPPSNHASKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggatctccctgtggtgttgtttctgctgtggggactgttactggacttgctgagtggt
gcggtgggaggcattctataccgcgtacatgaggaacagcctccaagcacactgattggc
agcctggcggctgaccaggggctaccagacactggacacctgtacaaactggaggtgggc
gctccctatctgcgggtggatggcaaaactggagatatctttaccactgagatccccata
gacagagagacactgaaggattgtcgtaataaaggcaagccctgcttcctggagtttgag
gtatccgtcacagaccttattcaaaatcagagtccacggctgatagagggaaggatcgag
gtgcaggatatcaatgataatacaccacaattcccctcacctgtccttaccctctcagtt
ccagagaacacccacatggggtcactcttttcaattccactggccactgacaaagataca
gagaggaatggagtagctgactacaccttaacggcaggaccagaggctgtagcactcttt
ggtctgcaagttgcagaggaccgaggtgaaaaattgcctcaactcattgtgttgggaagt
cttgatcgagagctgaaagactcctatgacctcaccatcaaagctgtggatggaggcaat
ccacctcgctacagcagtgccttgctgagggttgtcattgctgatgccaacgacaatgca
cccacgtttgaaaaatcttcctacgaagcagaggttgcagagaacagcccaatcggacat
tctgtgttacaggtgaaggctaatgattcagacatgggtcctaatggcgagattgaatac
acattacatcaggccattgatcctgtgccaaaactgctccggatagaccgctcatcaggc
atcatatatgtcaaaggcccattggatcgtgaggaaatcaacaatttgaaattttatgtc
gttgcacgagataaaggcccctcacccaaaagttctaaaacgtatgtttctattgatgtg
acggaccagaatgacaatgcaccagcagtggagattcgaggcattggtcttgtgactcat
agtgatggggtagcaaacatttcagaggatatgccagttggcactgcagtggcattggta
caggtttcagacaaggatgagggagagaatgccgtggtgacctgtgtggttgcaggtgat
gttcctttccagcttcggccagccagtgattcatcagttgacaacaagaggaagtacttt
ctgcagacgacaacacctctggactatgaaagagttagggactaccgggtggagatagtg
gcagtggattcaggcaatccagctctgtccagcactaactcgctaaaagtccaagtgact
gacacaaatgacaattcccccattttctcaccaaccctgtttgaagtggagtttgctgag
gagaaccaaccaggagaaaaggtggtagatgtagttgcctcagatgcagacagtggcact
aatgcagagcttgtctacagcattattgcagactcttcaacaagggggctttttgagatt
gaccccagctcaggcgaagtacgtgctcgaagccctcttgatcgtgagcacaaggagcgc
tatgagttccgtgttactgcagctgataaaggggttcccagtcacaggggtactgccaca
gttgtaatcaaagtacttgatcggaatgacaacgatcctaagttcatgctgagtggctac
agcttctcagtcttggagaacatgccacctcttagccctgttggcatggtaaccgtacag
gacatggatgagggcgagaatgctcaagttcaactttctgtggaaccggatgtgggtaaa
tttgtgatccagaatggtactggcactattctatccagtatctcatttgacagagagaag
gagagcagttacacattccggttgaaagctgtagatggaggggacccacccaggtcatcc
tacgttggagtgacaatcaatgtcctcgatgagaatgataatgcacctgttgtcaccaaa
ccatctaactcatcctttatgcgtctgtctcccatggctgctccagacagtgttgtggaa
gtggttgaagcagaggacattgattctggttccaatgctgaactagtatacagcattgct
gggggaaatccacatgaccttttttacatctctccatctaatggcgagatcacacttacc
aaggaactaactcgaaaacatagtggtctgcatcgactggtggtaaaagtgagtgacagg
ggcaaaccaacccgtcatgctattgccttggtacacatttacgtaaatgaaaccattgct
aatgtaagtcatgtggaagcacttgtggggcatagcttgtacaccccgctggatatggac
attgcaggagacccagattatggtttggctgcccagaggagcaacattgtatatggcagt
ttagctggagtggcgggagtggtcactgtgattgttgtggtggtcttcatcaggcatcgc
cttcaaagagaagctaagagtggttatcaggctggcaagaaggagaccaaagatttgtat
gcccccaagcaagggccaaaaagtggcaaggggagaaagggtaaaaaaggtaagccacca
aagtcacctaaacctcttggagaggatgaggaagtcagccttcaaaagagtctgaaattt
aaccttgatggggtcaacgacagccccaggatccatttgcctctgacatatccgcctgga
agccctgacctaggcaggcactaccgttccaattccccattgccctccatccagctccag
gcccagtccccatctgcctcccaaaagcatcaggctgtccaggagctccctgctgccaac
acctttgtgggaacaggcggtgatgacaactccaccggctcagaccagtactcggattac
agctacaagaccaatcaaccaaaatacagcacaaaaacgctcccgcatcgcagagtgacg
ttctccacagccaatcctgtgcaagatcagcaggactcctctcagcaaagttactatgac
agtggcttggaggagtccgagacccccagcagcaagagctcttcgggaccccgtatcggc
cccctcgccctgcccgaggaccactacgaacggaccacccctgatggcagcatcggagag
atggaacacccagaaactgatattcgctcattgcctgatgttgccatgacgggaaactgc
agccaggagtgcagcgagcttggtcattcagatgcctgttggatgcccggtcagccttcg
cccgtccgcaagacccgcaacccccctaaactgtccacgtttgtgccttatcaggagagg
gggagcctgggacgcctggccaatgggagcgtgaggctgggaggagaggagaacaggcca
cgcctcccaccttcccgtagtgcctactccagtagtgaccacacccccagtgaccacgcc
ccactagaggaggtgcctctaagcgtgacatcagagttcccgcctaccagccccccttcc
aatcacgcctcaaaaagagagatatacctgtga
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