Megalobrama amblycephala (Wuchang bream): 125260538
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Entry
125260538 CDS
T08212
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
NDNF
YjeF_N
Motif
Other DBs
NCBI-GeneID:
125260538
NCBI-ProteinID:
XP_048034901
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Position
LG24:complement(13622359..13661343)
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AA seq
1567 aa
AA seq
DB search
MMAHIFPLVLLERTTLILVTVLLMLVFEVHSQGRLKLTVLSEDRLQMKWKEAEGPVQGYK
VRVRPITEVQQPELMLTTTRGRATVAGLDSRQEYLLQVLVLNGTQEKLIAKRRFTIDGLR
EEELIRSGNREQKKKTPSIGSGSGEVDDVTEALAALPTVLYREPTTTEPPAVPELEPEID
RSPKEKKKKDKNRSKTEDKNDQEDNGGKSVKEEVTNKLRKNTPTQPVTGVSTRKPFECSA
GVQADLVLLVDGSWSIGRTNFRKVRDFLEGLAVPFHIGPQGVQIALSQYSGDPRTEWHLN
NFTSREPLLEAIRNFRYKGGNTFTGQALIHALENNLKEEVGARPNTPQFLLLLTDGKSQD
DAIAAANRLKNAGVEIIAIGVKNADEAELRQVASEPLELNVYNVNDFPLLSKLVGRLARI
LCGKIEDRIKAKRMERPTQDPVLSYPSPTDLQYIGLGSREVRLRWTAPSKGPQQYRVVYH
TAEGQSLKEVVVNGTSSTALLTGLSSQTQYHLSIFPVYENNVGSALRGTFTTLPLAIPEA
LEVTASSPSSLRVRWQPAAGATQYMALYSALNDGEPDDAKEVKFGPAQTDVELVDLMPST
DYSVTLYALYDEDPSDPITAIGTTFPLPSPLSLQFPMVSHSTLKVTWVPGAVDVPAHRIV
YSTNHGSDVKQVEVKGVNTVLLQNLSSLSRYLVSVQSLYEKGLSTPITANVTTLRVPAPS
DLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLTVDGESEGAILEEVEEDKE
YQISLSALYADGAQSEAVAIRYSTLSGGGPSSLSISEETAVSMLVTWVHPNAHVLQYRVS
YTPLNGDARENSVSLPGRERRVLLQNLQPDTRYSVLVTAEYRSREGGSASAQGKTTSLRV
SSVSVVRSDHSSICVSWRPVPAVSGYRIVIQALRDKQTKEEIVDAGSSSHCFSELQSETV
YRISVHSRLGTVEGAAVTILHPTATAPVRIQVPPRLHPIQREVCPEMTVRNHVIKGFNMM
EAFGLTQRAHSTIEGVAAEPFIFNTLPSYTLYRDVQLTQSTGFIHPAGFSPEHTISMAFR
LLQDSPREPFALWQLTDNDFQPKMGVVLDPEKKLLLYFSLDYRGEIQELTFDQPQVHSVF
YGSFHKIHLSVSQVSVSLSVDCQRVGERPARPLGTLPTDGFEMLGKLVRTRGPHSGSAAF
QLQSFEIVCNTTWASEDSCCDLPSQRDEESCPAPAYACTCTTDVPGAPGDTGPPGRPGPR
GEKGEKGELGQKGEVGPPGKPGPEGGFGTLGPAGPRGITVMGKVGPPGARGEKGDIGRPG
SQGLPGPPGPKGEEGIPGPKGTRGVEGNIGSPGITGPRGFQGIPGHPGPVGERGPLGPVG
PTGLPGSKGERGEKGEPQSLAVIFQLVSQACEKLVHNEVLKLDAFLNEMNRKPVPIQEPV
APPGEPGIPGGRGSPGSRGPQGRQGSRGESGRPGYPGEQGRRGMPGEKGSPGANVLGPQG
IKGFAGPPGESKTGEPGPKGEDGKAGPPGIPGASGLRGEIGPPGVCDNSGCYQGPPAAED
PYLGYQP
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgatggcccacatctttcctctcgtcctcctagagcgaacgacactcatcctggtgacg
gttctccttatgctggtttttgaagttcattcccaaggccggctgaagctgactgttctg
tctgaagatcggctgcagatgaaatggaaggaggcggaaggaccggtgcagggttacaag
gtccgtgtgcggcccatcacagaggttcaacagccagagctgatgctgacaaccacacgc
ggccgggccacggtggcaggcctggactccagacaggaatacctcctccaagtcctggtg
ctcaatgggacacaggagaaactcattgcaaaaagacgttttaccatcgatgggttgcgt
gaggaagagttgatccgcagcgggaacagggagcagaagaagaaaactccctccattggc
tctggatctggagaggtggatgacgtgacggaggctctagcagcccttcccactgttctc
taccgagaaccgacgactacagagcctcctgctgtacctgagcttgagccagaaattgac
agaagccccaaagaaaagaaaaaaaaggacaagaatcgatccaagactgaggataaaaat
gatcaagaggataatggagggaagtcagtgaaagaggaagtcaccaacaaactgagaaaa
aacaccccaacccaacctgtcacaggtgtttccacacgaaagccgtttgaatgcagtgct
ggagttcaggcagatctggtccttcttgtggatggatcctggagcatcggccgcacaaac
ttcagaaaagtgcgcgacttcctggagggcctggctgtcccctttcacatcggccctcag
ggcgtgcagatagcattatctcagtacagtggagatcctcgcacagagtggcatcttaat
aacttcacctctagagagccgcttttggaggccatcaggaacttcagatacaagggaggc
aacactttcactggtcaggctctcatccatgctcttgagaacaatctcaaggaggaggtg
ggggcacggcccaacaccccacaattcctgctgcttttaactgatggtaaatctcaggat
gatgccattgccgcagccaacaggctgaagaatgctggcgtggagataattgctataggt
gtgaaaaatgcagatgaggccgagttgaggcaggtggcatctgaaccactggagctgaat
gtgtataacgtgaatgattttcctctgctcagtaaactggtgggaagactagcacgcatc
ctctgtggcaagattgaagatcgtattaaagcgaagagaatggagcgacccactcaggac
ccagtcctgtcttatcccagcccaactgatctgcagtatataggactaggctcacgagag
gtgcgcctgcgttggacggcccccagcaaaggtccccaacagtacagagtagtgtaccac
actgctgaaggacagagtctgaaagaggtggtggtgaatggaacaagctccacagcactg
ctgacaggactgtcctcacagacacagtaccacctgtccatcttccctgtctatgagaac
aatgtgggctctgctctcagaggaaccttcacgacgttaccattggcgatacctgaggct
ctagaggtcaccgcctcctcccccagcagcctgcgagtacgctggcaaccggccgcagga
gccacgcagtacatggccttatactccgcactcaatgatggagagcctgatgatgccaaa
gaggtgaagtttggacctgctcagacagacgtagagttagtggatctgatgccatccaca
gattattcagtcacactctatgctttgtatgatgaggaccctagtgacccgatcactgcc
atcggcaccacattcccattgccgtctcctctcagtttgcaatttcccatggttagtcat
agcactctgaaggtcacatgggtccctggagctgtcgatgttcctgcacaccgcatcgtc
tacagtaccaatcacggcagtgatgtcaagcaggtggaggtcaaaggtgtgaacacagtg
ttgctgcagaatctgtcttccctctccaggtatctggtgtcagtccaatcactctatgaa
aagggcctgtccactcccatcacagccaatgtcactaccttgagggtcccggctccctca
gatctgagagtcactaacttctccggcagtgacataacggtgcgatgggaagccgcggca
gatgacgtggtctcttatctcatcaaatggatctccctcagcggaggagacctcaggcag
ctgacagtagatggggagagtgagggggcaatcttggaagaggttgaggaagataaggaa
tatcagatttcactctctgcactatatgccgatggggctcagagtgaggctgtggccatt
cgatacagcaccttgtctggaggtggtccgagcagtttatccatctcagaggagacagca
gtcagtatgctggtcacctgggttcaccccaatgcccatgtgctgcagtaccgtgtgtct
tacactcccctaaatggggatgcgagggagaactcggtgtcattgccaggcagagagagg
cgggtcctactgcagaatctgcagccagacactcgttacagtgtgctggtgactgctgag
taccgcagcagagagggcggcagtgcctcagcccaggggaaaaccaccagcctgcgggtg
agcagcgtgagtgtggtacggtctgaccactccagtatatgtgtgtcctggagacccgta
ccagcagtcagtggttatcgcatagtcatccaggccctcagagataaacagactaaggag
gagatagtagatgctggcagcagcagtcactgtttctccgagctgcagtctgaaactgtg
taccgcatcagtgtgcactcccgtctgggaacagtagagggcgctgctgttaccatcctt
caccccacagcaaccgctcctgtgagaattcaggttcctcctcgtctgcatcccatacaa
agagaagtgtgtcctgagatgacggtcagaaatcatgtgattaaaggattcaacatgatg
gaagcattcggtctgactcagagagctcactctactattgagggtgtggcagctgaacct
ttcatcttcaacaccttgcccagttacaccctctatagagacgtacagctgacccagagc
acaggctttatccacccggctggattttctccagaacacaccatcagcatggcctttagg
ctcttgcaggattcacccagggaaccgttcgccctctggcagctcacggacaatgacttc
cagcccaagatgggggtagtgctggaccctgagaagaagcttctgctgtatttcagtctg
gactacagaggagagatacaggaactgacctttgaccagccacaagtccactcggttttc
tacggcagttttcacaagatccatttgtcagtcagtcaggtgagcgtatcactgtctgta
gactgccagagggttggtgagcggcccgcacgtcccttgggaactttgcctactgatggc
tttgagatgctgggaaaactagtgaggacacgtggacctcacagcggatctgcagctttt
cagctgcagtcctttgagattgtgtgcaacactacttgggcatcagaagacagctgctgt
gatctgccctcacagagagacgaggagagctgtccagcccctgcttatgcttgcacctgt
accaccgacgtccctggagcacctggagacaccgggccacctgggagacctggccctcgt
ggggagaagggagaaaagggagagttgggccaaaagggtgaggtgggcccacctggtaaa
ccaggccctgaaggtggctttggcactcttggacctgctggtccacggggaataactgta
atgggcaaagtgggtccaccaggagcaagaggggaaaaaggagatatcggaagacctggg
agtcagggtttaccagggcctcctggtccaaaaggtgaagagggcatccctggtcctaag
ggcaccagaggagtggagggtaacattggcagcccaggaatcacagggccaagaggtttc
cagggtatacctggtcatccagggccagtaggagagagagggccactaggtcctgtaggg
cccaccggtcttcctggaagtaagggtgagagaggagagaagggcgagccacagtcgctt
gctgtgatcttccagcttgtttcacaggcctgtgaaaagcttgtgcacaatgaagtgctg
aagttggatgcttttttgaatgagatgaatcgaaagccagtgcccatccaggaaccagta
gcgccaccaggagagcctggtataccggggggaagagggtcacctggatccagaggccct
caggggcgacaaggaagcagaggggagtctgggagacccgggtaccctggtgagcaggga
cgcagaggtatgccgggtgagaaagggtctccaggagcaaatgtgctgggaccacaggga
ataaagggttttgcaggacctccaggtgaaagtaaaacaggggaaccaggtcccaaaggc
gaggatggtaaagcaggacctccaggtattccaggagcttcaggtctgcgaggagaaatc
ggaccccctggtgtatgtgacaacagtggatgttatcaaggacccccggctgcagaggac
ccatacctcggataccagccttga
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integrated database retrieval system
