Megalobrama amblycephala (Wuchang bream): 125260771
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Entry
125260771 CDS
T08212
Symbol
hbs1l
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125260771 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125260771 (hbs1l)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125260771 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
125260771
NCBI-ProteinID:
XP_048035244
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Position
LG24:15788689..15831669
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AA seq
682 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDVYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETVEEEV
YEEEEEEMPTSPIITSTLDPLQQGQLYSCLDQMRAVLGDSISDSTLTQAALKYDCDPHRA
LDFILTEENTNTHAPPARTNTLPEPTTTAAPQKAKVRDAPESRVEAEVVPKVARMTVSGK
KQTMGFDVRSAEENGVAPSVRRGPSPEVTAASTTETPSKPGTVSEDSNAPTPSRPAGKSK
QQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKA
GKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVVTLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEIV
SKLGHFLKQAGFKDSDVYYIPTSGLSGENLTTRSKIAELTAWYTGPCLLEQIDAFKPPQR
SVEKPFRLCVSDVFKDQGSGFCVTGKVEAGFIQTGDKLLAMPPNETCTVKGITLHDEALD
WAAAGDHVSLTVTGMDIIKINIGCIFCDPKEPIRACTRFRAKILLFNIEVPITKGFPVLL
HYQTISEPATIRRLVSILHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKEL
GRFMLRYVGSTIAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccacaggaatgtccgaggttataactacgacgaagactttgatgatgatgac
gtgtacgggcagtcagtggaggatgactactgcatctctcctgccactgccgcacagttt
atctattcacgtcaagactcgaggcaggctcgacatgtagagaccgtggaggaggaagta
tatgaggaggaggaagaggagatgccaacctctccaatcatcacaagcacactagaccca
ctacagcaaggtcagttgtattcctgtttggatcagatgagagcagtactgggagactca
atttcagactccacactgactcaggcagctcttaaatacgactgtgaccctcaccgggcc
cttgatttcattctaactgaggagaacaccaatacacacgcccctccagcccgaaccaac
acactgcctgagcctaccaccacagctgcaccgcagaaagcaaaagtacgggacgctccg
gagagtcgtgtcgaagcggaggtcgtccctaaggttgcccggatgactgtgtcaggcaag
aagcagaccatgggctttgatgtgcgaagtgcggaagaaaatggcgttgccccatcggtt
cgcagaggaccgagtccagaggtcactgctgcttcaaccacagagaccccatccaaaccg
gggactgtgagtgaagactcgaatgccccgaccccatctcgacctgctggaaagagcaaa
cagcagctcaacatccgtgccgaactggagaaaagacaaggaggaaaaccattactcaac
ctggtggtcataggtcatgtagatgctggtaagagcactctcatgggtcatctgttatat
ctgctggggaacgttaataagagaaccatgcataaatatgagcaagaggccaagaaagct
ggcaaggcctcgttcgcctatgcgtgggtattggatgagacaggagaggaaagagacaga
ggagtgactatggatgtgggcatgacaaaatttgagaccgactcgaaggttgttactctg
atggatgcaccgggacacaaagacttcattccgaacatgatcacaggggcggcacaggca
gatgtggctgtgttagttgtagatgccagccgcggggagtttgaggccgggttcgaggca
ggggggcagacccgtgagcacggccttctggttcgatccctcggagtcacgcagcttgct
gttgctgtcaacaagatggatcaggttaactggcagcaggagaggttccaggaaatcgtc
tctaagctcggtcactttctgaagcaggctggttttaaggattctgatgtttattacatc
cctaccagtggcctatcaggagagaatctgaccactaggagcaaaatagcagaacttaca
gcctggtacactggaccatgcctactggaacagatagatgcatttaaacctccccagagg
tcagtggagaagcccttcaggctttgtgtctcagacgtctttaaagatcagggctctggt
ttctgtgtgaccgggaaggttgaggctggcttcattcaaacaggagataaattgctggcc
atgccccctaatgagacctgcactgttaaagggatcacactccatgatgaagcgttagac
tgggcagctgccggtgatcatgtcagtctaactgtcacaggcatggacatcatcaaaata
aacattggatgtatattctgtgatcccaaagagcccatcagagcctgcacaagattccga
gcaaaaattctcctctttaatatagaagttcccatcacgaaaggcttccctgtgctgttg
cattatcagaccataagcgaaccggctactattaggaggttagtcagtatattacacaag
agcagtggagaagttctcaagaagaaaccaaagtgtttgagtaaaggacagaacgcagtg
gtggagattcaaacgcagaggcctgtggctctggagctctataaggactataaagaactg
gggcggttcatgctgagatatgtgggctccaccattgctgctggagttgtcacggagatc
aaagagtaa
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