Megalobrama amblycephala (Wuchang bream): 125265409
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Entry
125265409 CDS
T08212
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04510
Focal adhesion
mamb04512
ECM-receptor interaction
mamb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125265409 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125265409 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125265409 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mamb04147
]
125265409 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125265409 (col4a6)
Exosome [BR:
mamb04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125265409 (col4a6)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125265409 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125265409
NCBI-ProteinID:
XP_048041570
LinkDB
All DBs
Position
LG3:43887849..43989618
Genome browser
AA seq
1714 aa
AA seq
DB search
MRLWTFVLPVVLYAVSAQGGSKLQEPCAGRDCRGPCPCLPLKGSRGRPGELGQVGSNGPE
GFIGGSGPVGPKGEKGHVGRKGPSGLKGDKGPMGVPGFSGNDGVPGHPGQEGPRGPPGLD
GCNGTRGDPGGRTVDGFPGIPGAPGYPGQKGQKGEPYYRLPPFLTDGPPGPAGFPGPLGP
RGPDGFPGLPGPPGPPGPPGSPGQGYKGEPGEKGDVGLPGLRGNPAVQFNAPAISTINKG
EKGEVGQPGDPGLPRGNGVVEFVGFPKGDKGTKGEKGYAGNPGLPGRPGPTGPFGYKGET
GEKGILGLPGLRGPPGLNGPPGLPGRKGFTGNPGFPGQSGFTGPKGDRGDPGPPGPILEP
TNGIKGPQGDPGFPGYQGQTGDTGFPGPPGPPGPPGPPGIPVFISGRPGISGFPGSRGPK
GQRGNPGRDSYGPEGLPGSQGLSGPPGPPGPPGSSLNAFSNALPGFRGQSGPRGFPGDRG
YKGFKGENGDCNCLGGGTTGEQGLQGPPGIPGFRGSNGVKGEIGDQGFPGPRGPQGFDGR
AGERGFYGRKGEKGNSFIPQGKGQKGDLGQQGLPGPLGVSGNPGRDGSPGFPGQPGPPGD
PGYGVTGDKGFPGIPGFKGRPGASGNPGFGYPGVPGFKGSQGDPGFNGLPGTPGLKGSAG
DSCGQAGLNDASLEEGGTPLPCRIPGEQGDPGFPGRPGGPKGQPGSQGVNGRPGFDGPKG
EIGEPGFGGQPGPQGFPGPRGDPGLPGTTNAGLPGSPGRDGFPGVPGAKGEPGVVLGATP
GGPGSPGRPGEPGDKGQPGTPGLPGRPGNDGRNGFPGVKGERGVDGKPGLVGPIGPPGEI
PPGGIPGPRGPAGAKGFEGHQGCQGSPGLKGMRGDPGPPGPGGIKGLPGLPGVPGPQGYR
GPPGPPGIAARPGTPGRPGIKGVKGSSGLLGFPGSSGFPGLPGDPGVKGLPGFTGLDGLR
GEDGSKGLKGDRGTPGLPGRSLPELPLEQLEKGEKGYRGADGLPGFTGPRGDKGFPGRPG
REGFPGSPGVAGQGKGLPGQPGIPGYPGPSGFPGSKGLPGVMGFPGSAGLRGDDGVPGLQ
GFPGTQGQSGVKGEKGDSYELSGPPGPKGALGNPGFRGGPGLPGEPGDSGFPGALGFQGQ
KGFLGEPGAPGFSGSPGLPGIRGLPGYPGLKGRDGDPGRPGASGSPGEKGFPGSPGLDGL
NGLPGSKGQPGVPGVIEDARPGAPGVNGRKGERGSSQPGGPGRPGEKGFKGDTGAPGSRG
YPGNPGPPGPPSPSNIPGPPGDPGLPGLDGREGPVGPPGLRGPPGPGTVQGDRGDPGFPG
PPGKQGARGEPGAFGAPGFQGNPGLKGQRGDPGFSGVRGPPGFPGEPGYYGRNGLKGLQG
FPGPKGLPGVVYPYNITGNMVNGDPGPPGENGLVGQTGIPGLPGSPGVPGPKGFKGPVGR
LGPVGPAGSPGTFGDTGPPGIQGPTGNQGPRGNPGLPGLPAPPVRSNGIGYTLVKHSQSR
QMPMCPQGMSKLWEGYSLLYVEGQEKAHNQDLGLPGSCLPHFSTIPFLYCTVNEICHYAS
RNDKSYWLSTTAPIPMMPVADQQISEYISRCSVCEAPSQAIAVHSQDLSIPTCPQGWRSL
WIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTV
EQDEQFVQGPSQETLKGDQYRSRISRCQVCMKIL
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgaggctttggacttttgtgttacctgttgtcttgtatgcagtatctgctcaagggggg
tcaaagctgcaggagccatgtgcgggccgggactgtagaggaccgtgtccatgtttgccc
ttaaagggtagcagggggcggccgggcgaacttggacaagtgggcagcaatggtcctgag
ggtttcattgggggctcaggaccagttgggcccaaaggagaaaagggccatgtaggacgc
aaagggccctctggactaaaaggagataagggcccaatgggtgttcctgggttttctgga
aatgatggtgttcctggacaccctggtcaggaggggcccaggggacccccaggtctcgat
ggctgtaatggcacacgaggtgacccaggtggcagaactgttgatggatttcctggtatt
cctggtgctcctggataccctggtcagaaaggtcaaaaaggagagccgtattataggtta
ccaccatttttgactgatggccctccaggtccagcaggatttccaggtccattggggccc
cgaggtccagatggatttcctggtctacctggtccacctggtcctcctggacctccagga
agtccaggtcaaggatacaaaggggagccaggcgaaaagggggatgttggtctaccggga
ctcaggggcaatccggccgttcagtttaacgcaccagcaataagcactatcaacaaagga
gagaagggagaagtgggccagcccggtgacccaggcctccctcggggcaatggagtggtg
gagtttgttggctttccaaaaggagacaaaggaactaagggtgaaaaaggctatgccggt
aatccaggtcttcccgggagaccaggaccaacaggcccatttggttataaaggtgagact
ggagaaaagggaatcctgggcttgccaggcttgaggggtccacctggtctgaatggtcct
cctgggctcccagggagaaaaggcttcactgggaatccgggttttccaggccaatcaggt
tttactggcccaaaaggtgacagaggagacccaggtccacctggaccgattttggaacca
acaaatggaattaaaggtcctcaaggtgatcctggctttcctggttatcaggggcaaact
ggggatacaggttttcctggtccgcctggtccgcctggtcctcctggtcctcctggaata
cctgtttttatctcaggtcgccctggcatttctgggttccctggtagtcgtggacccaaa
ggacagaggggaaacccaggtcgggattcttatggtcctgaaggtcttcccggaagtcag
ggactctcaggacctcctggtccccccggaccaccgggcagttcattaaacgcgttctca
aatgcactacctggtttccggggtcagtctggtccaagaggatttcccggagacagaggc
tataaagggtttaaaggagaaaatggtgactgcaactgtttgggtggaggaacgacgggt
gaacaaggacttcaggggcctccagggatcccaggtttccgaggatctaatggtgtgaag
ggagaaattggtgaccaaggcttcccaggacctcgtggaccacagggctttgatggtcga
gcgggtgagagaggcttttatgggcgtaaaggagagaaaggtaattctttcatccctcaa
ggaaaaggacaaaaaggtgatttgggtcagcagggtcttcctgggccacttggagtaagc
ggcaaccctggaagggatggatctcctggcttccctggacaaccaggtccacctggggac
cctggttatggggtgactggagataaaggttttcctgggatcccagggttcaaaggtcgt
cccggtgccagtggcaatcctggttttggctatcccggtgtacctgggttcaaagggtca
caaggtgatcctggattcaatggtcttcctggaacacctggacttaaaggttctgcaggt
gacagctgtgggcaggcggggcttaatgatgcctctttggaagagggaggaacaccactg
ccctgtaggattcctggtgaacaaggagatccaggattccctggacgtcctggggggcca
aagggtcagcctggttcccagggagtaaacgggcgaccagggtttgatgggccaaaaggt
gagataggagaaccaggctttggaggacagccaggacctcagggtttccctggacccaga
ggagatccaggtttaccaggaacaactaatgctggcttaccagggtctccaggaagagat
ggttttccaggtgtgcctggagctaaaggagaacccggtgtggtacttggagccacccct
ggaggtccaggttctccagggagaccaggagagccaggagacaagggtcaacctgggaca
cctggtttaccaggaaggcctggtaatgatggacgcaatggttttcctggcgtaaagggt
gaacgaggtgtggatggaaaacctggtctcgtaggtcccataggtccacccggagaaatc
cctcccgggggtatacctggtcccagagggccagctggagctaaaggttttgaaggacat
caaggctgccaaggttcccctgggcttaagggtatgagaggagatccggggcctccaggg
cctggtggaataaaaggtttaccaggacttcctggcgtcccagggccacagggatatagg
ggacctcctggaccccctggaattgcagcacgtccaggcacaccaggaagaccaggaata
aagggggtgaaggggtcttctgggcttttggggtttccaggatcatctggttttcctgga
ctcccaggtgacccaggagttaaaggtttacctggtttcactgggctggatggcttaaga
ggggaagatggatcaaaaggactcaaaggggatcgtggtactccgggtcttcctggacgc
tctcttccagagttaccattagagcagctggaaaagggtgaaaaaggttacagaggagct
gatggactgcctggtttcacaggaccaagaggtgataagggttttccagggcgacctgga
cgtgaaggctttcctggatcacctggtgttgcaggccaaggaaaaggtttacctggccag
cctggaatcccagggtatcctggcccctctggcttccctgggtctaaaggtttacctgga
gtaatgggcttccctggctcagcaggccttaggggtgatgatggtgtgcctgggcttcaa
gggttcccgggcactcaaggacaatctggtgtcaaaggtgagaaaggtgactcatacgaa
ttatctggaccccctggaccaaagggtgcacttggaaatcctggattccgaggtggtcca
ggacttcctggtgaaccaggtgattcaggtttcccaggagcgttaggatttcaaggccag
aaaggtttccttggtgagccaggagcaccaggattttctggctcaccaggcctcccaggc
atcaggggccttcctggatatccaggactaaaggggcgtgatggagatccaggccgtcct
ggagcttcaggttcaccaggagagaaaggttttccaggctcacctggtttagatggactt
aatggtcttccaggatccaaggggcagcctggagttccaggtgtgattgaagatgctcgg
cctggagctcctggtgtgaatggtcgtaagggagagagaggctcatcacaacccggtgga
cctggccgccctggagagaaaggattcaaaggagacactggtgctcctggttctagaggc
taccctggtaatccaggcccccctgggccacctagtccttctaatatcccaggtcctcct
ggagaccctggacttccaggattagatggacgagaaggtcccgttggccctcctggtctc
cgtggtccaccaggccctggaacagtccaaggagacagaggagatcctggatttccaggg
ccaccaggaaaacaaggagcacgtggagaacccggtgcttttggagcccctggatttcaa
ggcaaccctggtttaaaagggcaaagaggtgaccctggctttagtggtgtacgtggacca
ccagggttccctggagaaccaggatattatggcaggaatggactcaaaggattacagggt
tttcctggtcctaagggacttccaggtgttgtgtacccttataatataactggcaatatg
gtaaatggggatccgggcccaccaggtgagaatggattagttggccagacaggaatacca
ggcttgccaggcagtccaggagtcccaggtcccaaaggatttaaagggccagtgggtaga
ctcggtccagttggtcccgctggatctccgggaacttttggtgacactggacctccagga
atccaaggacccacaggaaaccaaggaccccgtggcaatccagggttgccaggtcttcct
gctccaccggtgcgcagtaatggtattggttatactttggtgaaacacagtcagtccaga
cagatgcccatgtgtcctcaaggcatgtccaagctatgggagggatacagtttgctgtat
gtggaggggcaggagaaagcgcacaaccaggacctgggattgcctggctcatgtctgcca
catttcagcactatccccttcctgtactgcacagtcaatgaaatctgccactacgctagc
cggaatgacaaatcctattggctgtccaccactgcacccattcccatgatgcctgtggca
gatcagcagatatccgagtacattagccgttgctcagtgtgtgaggctccttctcaagca
atcgctgtccatagccaagatctcagcattccgacctgccctcagggctggagaagtcta
tggattggatactccttcctcatgcacacagctgcaggcgcagaaggcggcggtcagtca
ttggtgtctcccggttcttgtctggaggatttccgtgccactccgttcatcgagtgcaat
ggtgcccgcggcacctgccactactttgccaacaagtacagtttctggttgaccacagtc
gagcaggacgaacagttcgtccagggtcctagccaggagacgctgaagggagatcagtac
cggtcacgcatcagtcgctgtcaagtctgcatgaagatcttgtag
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