Megalobrama amblycephala (Wuchang bream): 125267210
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Entry
125267210 CDS
T08212
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125267210 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125267210 (xab2)
03041 Spliceosome [BR:
mamb03041
]
125267210 (xab2)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125267210 (xab2)
Spliceosome [BR:
mamb03041
]
Complex B
Other components
Prp19-related factors
125267210 (xab2)
Complex C
125267210 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_19
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
NRDE-2
TPR_1
Tcf25
LTN1_E3_ligase_6th
DUF4515
Motif
Other DBs
NCBI-GeneID:
125267210
NCBI-ProteinID:
XP_048044602
LinkDB
All DBs
Position
LG1:29561160..29573631
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AA seq
849 aa
AA seq
DB search
MPSLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFGRNLPLPETAIRVFRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDEDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTVDPVKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDRCPPKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRLTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMRLLEQKAQQLAAEAEQ
DRPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDDEDAEDGEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgcttagcgggaaggcagacgttttattcgaagatgatgatttgccttatgag
gaagaaatcatcaggaatccatattcagtgaagtgctggatgcgttacattgagcacaag
caaaatgctcagaaatcggtgctcaatatgatctatgaaagggctttaaaagagctgcct
ggcagttacaagttgtggtacaactacctgagagagaggaggaaacaggtgaaaggcaag
tgtatcacagatccagcatatgaggaggtgaacaactgtcatgagagagcacttgtgttt
atgcataagatgccgaggatatggatcgactactgtcagttcatggtgtctcaatgcaaa
attacacggagccgacggacgttcgacagggcgttacgagcgctgcccgttacccagcat
cctcgcatctggcccctgtatcttcgctttggccgcaacttgcctctcccagaaacagct
attcgtgtttttcgtcgttatctaaagttgtctcctgagaatgcagaggaatacattgat
tacctgcgttcagttggacgtctggatgaagctgcactccgactggcagctgtggtcaat
gatgaaaactttgtttctaaagagggaaagtccaattatcagctttggcatgagctctgt
gacctcatctcacaaaacccggacaaggtgacctcactgaacgtgggagcgattatccga
ggaggcctcacccgctttactgaccagcttggcaaactctggtgttctctggctgattac
tacatccgcagtggccactttgagaaggctcgagatgtgtatgaggaagccatcctaacc
gtagtcactgtgcgagacttcacccaggtttttgacagctatgcacagtttgaagagagt
atgatcgctgccaagatggagaccacgtctgaactgggacaagacgaagatgaagacatt
gacttggagttgcggttggcccgttttgagttgctgataacacgacggccgctcttatta
aacagtgtgctgctccgtcagaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctatgagggccaacctcgacagatcatcaacacatacacagaggcggtgcaaacagta
gatcctgtgaaagccacaggaaagcctcacagtctctgggtgtccttcgccagattctat
gaggataacgaacagctagatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgagtatggagagatggagctgaga
catgagaactatgaccaggctttgcgtatactaaggaaagcaacagcgattccatcaaga
aaagcggagtactttgacgcatcagaaccggtgcagaatcgagtatataaatccttgaaa
gtttggtccatgcttgccgacttggaggagagtcttggcacgttccagtccacaaaggca
gtgtatgatcgcatcattgatctccggatcgccacgcctcagatcatcattaactatgcc
atgtttcttgaagaacacaactactttgaagatagcttcaaggcatatgagcgtggcatt
gccctctttaagtggcctaatgtccatgacatctggaacacgtacctcactaaattcatc
gaccgttatggaggcaagaagctggagagagcacgagatctgtttgagcaagcgctggat
aggtgtcctcctaaatatgccaaaacaatctacctgctgtacgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagcgagccactgcggccgtagagcca
gaggagcgccatcaaatgttcaacatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagctatctatcagaaagccattgaggtcctgccagatgaacacgccaga
gacatgtgcctgcgcttcgctgacatggagagcaaacttggagagattgacagagcaaga
gccatctactcttactgctctcagatctgtgatcccaggttgaccgctcatttctggcaa
acctggaaggagtttgagattcgacacggtaacgaggacaccatccgcgagatgctgagg
attaaacgtagcgtgcaggccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggcaaccactaatgctactggaacagtgtcggatcttgctccggggcagagcgga
gtggatgacatgaggctgctggagcagaaggctcagcaactggcggcagaggctgaacag
gacagacccaaacctaaagacaagatccttttcgtcagaagtgacacctctcgcagtgaa
ctcgccgaactggccaagcaagctaatccagatgagattgacattgatgatgatgacgat
gaggatgcagaggatggagaaccagatgaagtccagttggagcagaaatctgtccctact
gctgtcttcggaggactaaaggacgactga
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