Megalobrama amblycephala (Wuchang bream): 125267516
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Entry
125267516 CDS
T08212
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125267516 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mamb03400
]
125267516 (msh3)
DNA repair and recombination proteins [BR:
mamb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125267516 (msh3)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Mo-nitro_C
PH_AIR9
Motif
Other DBs
NCBI-GeneID:
125267516
NCBI-ProteinID:
XP_048045177
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Position
LG4:39388663..39469548
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AA seq
1098 aa
AA seq
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MHTSVKRVFASKSSKKSSTQTTISRFFTSASDQSQPIDQPGINFQDRRHGGRGKKKLRDG
GMSSEKRPKLSHNVEEERDECMVTPSTLDKMVSPRASVSHATLTRLKDFSCPGNSESRVS
DQGIKMEVEPSDSGKTKTSAMHQHDTIMENSSSELVEEFREEPIKIKQFAKNTVIRKSSE
EPGIPNRRTKTIYTPLEEQYMEIKKQHVDTVLCVECGYKYRFFGEDAEIAAKELNITCHL
DHNFMTASIPTHRLFVHVRRLVSQGYKVGVVKQTETSAIKASSTNKSSLFTRQLHALYTK
STLVGEDVNPLLKLGDLEQAEDVVQDSGNNYLMCVSESFDKQSKELTVGMVVVQPSIGDV
MVDCFKDNVAHSELESRVLKIQPVEILVPSDLSETTERLLRNIALSSVQADDRIRIEKRE
STMFEYPTAMGIIKDFYRDTPHQAVENQGKGSYSLCMGLESPIVCCLGPVIQYLAEFKLD
KILMCSSSFKRLSSDADHMLLNAATMKNLEILCNQTTGSVKGSLLWVLDHTQTPFGKRLL
RKWVSQPLKSVIDIQARQEAVAEILSSESSVLPSLQSLLTRLPDLERGLCSIYHKKCSTQ
EFYLITSTLSRLSTELQALMPAIQTQLSSALLKNLLLDTPQLLSPAHNFLKVLDEKAAKT
GNKTEMFVDLTDFPVIQKRKEEIQSVLSDIMEHRREVRLVLKNPSLDYTTVSGQQFLIEV
KNSMSSIVPSDWVKINSTKVVGRYHTPFIVEKHRRLQQLREQLVIDCNHEWISFLHLLSF
LSCRLFGDHYYILRKAVCHLATMDCLFSLAQVAKENNYCRPEFLEDKSQILITAGKHPVI
TSLMGDQDQYVPNDTHLQGDGKRAMIITGPNMGGKSSYIRQVALVTIMAQLGSFVPAREA
SVGIVDGIYVRMGASDNISRGRSTFMEELVEASDILARATSRSLVILDELGRGTSTHDGI
AIAYATLESFIRDVKCLTLFVTHYPPLCELEHLYPQHVGNYHMAFLLNEPENTSDEEEMH
PEFITFLYQLIEGAAARSYGLNVARLAEIPESILRTAAFKSKELEALVNSRRNMVRVLSD
AWSINNKETLLNWRKCSS
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgcatacaagtgtcaaacgtgtgtttgcatccaaatcctccaaaaagtccagcactcag
acaactatcagcagattcttcacaagtgcaagcgatcaatctcaaccaattgaccagcct
gggattaacttccaagaccgacgccatgggggcagaggaaagaagaagttacgtgatgga
ggaatgtcctcagaaaaacgacccaaactctctcacaatgtggaggaggagagagatgag
tgcatggtgacccccagcaccttagataagatggtatcccctagagcaagtgtcagccat
gccaccctgacgagacttaaagatttcagctgcccagggaactcagagagcagagtctcc
gatcagggtataaagatggaggtggagccttcagactctggaaaaactaagacatctgcc
atgcaccaacacgatactatcatggagaacagctcatctgagttggtggaagaattcaga
gaagaacctattaagattaaacagtttgctaagaatactgtgatcagaaaaagttcagaa
gagcctggcattcccaacaggagaaccaagaccatatacacccctctagaggaacagtac
atggagatcaaaaagcaacatgtggacacagtgctttgcgttgagtgtggctataagtac
aggttctttggtgaggatgcagagattgctgcaaaggaactcaatatcacttgtcatctg
gaccataacttcatgacggccagcatccctactcatcgcctgtttgtgcacgttcgccga
ctggtctctcagggttacaaggtaggtgtagtgaaacagaccgaaacttcagccatcaag
gcctccagcaccaacaagagttctctcttcacacggcaacttcatgcactttacaccaaa
tccacgcttgtgggagaagatgtgaatcctcttctgaagctgggagatttggagcaggct
gaagatgtggtgcaggacagtggcaacaactatctaatgtgtgtgagcgaaagttttgat
aaacagagcaaggagctgaccgtggggatggtggtggtccagccaagcatcggggacgtg
atggtggactgttttaaagataatgtggcccattcagagctggagtccagggtacttaaa
atacaacctgtagagatcctggtgccttcagacctctcagagacgactgagaggttatta
cgcaacattgctctgtccagtgtccaagcagatgaccgaattcgcattgagaaacgagaa
agtaccatgtttgaatacccaactgcgatgggaattatcaaagacttctacagagacaca
cctcatcaagctgtggaaaaccagggaaagggttcctactccctctgtatgggtctggag
agcccgattgtctgctgtcttggtcctgtgatccagtatctggctgagtttaagctagac
aagattttaatgtgttccagttcattcaagcggctgtcgagtgatgctgaccatatgctg
ctcaatgctgctaccatgaagaacctggaaatcctgtgcaaccagaccacaggttcagta
aaaggcagtctgctctgggttctggatcacactcagactccatttgggaagagactgtta
agaaagtgggtgagccagccactgaaatctgtgattgatatccaggctcgtcaggaggca
gtggcagaaattttgtcttctgaatccagtgtccttccctctcttcagtctttgctaact
cgtctacccgacctcgagagaggactttgcagtatctaccacaagaaatgctctactcag
gaattttacctcatcaccagcactctctctcgtctgagcactgagcttcaagctctaatg
cctgccatccaaacacagctcagctctgcccttctaaagaacctcctactggacacacct
cagcttctaagccccgcccacaacttcttgaaagtactggatgagaaagccgcaaagacg
ggtaataagacagaaatgtttgtggatctgacggacttcccagtgatccagaaaagaaaa
gaagagatccagagtgtcctatcagacataatggaacaccggcgagaggttcggctggtg
ttaaaaaacccatctttggattatacaacagtgtctggccagcagtttctcattgaagta
aagaacagtatgtcatccatagtcccgtcagactgggtcaaaatcaacagcactaaggtt
gttggccgctatcacactcctttcattgtggagaaacatcggcgcctgcagcaactacgt
gagcagctggttattgactgcaatcacgagtggatcagtttccttcaccttctatctttt
ttgtcatgcaggctatttggggaccattactacatcctgaggaaagcagtgtgtcaccta
gcaaccatggattgcctcttctcattggcccaggttgctaaagaaaataattactgcagg
cctgagtttcttgaagataaaagtcagattttgattacggcaggcaagcatccggtcatc
acctcgctgatgggagatcaggatcaatatgtccccaatgacactcacttacagggggat
ggcaaacgagccatgatcatcaccgggcccaacatgggtggcaagagctcttacattcgt
caggttgccctggtgaccatcatggcacagctgggatcttttgttcctgccagagaggcg
tcagtgggcattgtagacggcatatatgtcagaatgggtgcatctgacaacatctcaagg
ggcaggagcacctttatggaggagcttgtggaagcatcagatattttggctcgtgccacg
tcccgctccctggtgatcctggatgaactgggtcgaggcaccagcactcatgacggcatc
gctattgcctatgctaccctagagtccttcatcagagatgtgaagtgtctgacgttgttt
gtgacccactaccctccgttgtgtgagctggagcacttgtaccctcagcatgtggggaat
taccacatggctttcctgctcaatgagccagagaacacttctgatgaggaggagatgcat
ccagagttcatcacgtttctctatcagctgattgaaggcgcagccgccaggagctacggg
ctaaatgtagcacgtctggctgaaatcccagagtccatcctcaggaccgctgcattcaag
tccaaagagttggaggctctcgtgaacagccggaggaatatggtgagagtgttatctgat
gcctggagtatcaacaacaaggaaacattgctgaattggagaaagtgtagttcctaa
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