Megalobrama amblycephala (Wuchang bream): 125267699
Help
Entry
125267699 CDS
T08212
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125267699 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mamb03400
]
125267699 (lig3)
Enzymes [BR:
mamb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125267699 (lig3)
DNA repair and recombination proteins [BR:
mamb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
125267699 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
125267699
NCBI-ProteinID:
XP_048045538
LinkDB
All DBs
Position
LG4:46261793..46278234
Genome browser
AA seq
1010 aa
AA seq
DB search
MPSFCFGRLVRTISRSSLPTLFRETVFRATLNRQNLQCSRALTFTWGFASSPSGIFFCVP
QFRQFTFSSGSYFHVSWPEWQREQPDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITELEGWEELQDEDKDLINKHV
SELAAKTNATPKKKVQAKLNNSGQLSAPLADPTVNAPRKFSGFTATKAGSSSSSPGPSPA
KPTQGSALSAQLCDPKHKDNLLREFRKLCALVAEKSGYNAKTEIIRDFLAKGSGGDKFRG
DLYLTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCNQDEMVQDLEQGDVSETVRMFFEDS
KSFPPAAKSLLTIQEVDASLSRLSQLTKEDDQQAELQDIAKKCTGNDLKCYIRLVKHDLK
INSGAKHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQEASNGSGPRKILSVEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFPGGHSMILDAEVLLIDTRSSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFN
GVSLMDKPLCERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
IKGHYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESR
KWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEVT
AGPSKTSQNDKSSSGGESGGSSPSASHGASSAKTKNGHTPKAKAVKTESSSPAVKRKLPT
EKQNAKKIKTEPAHSNGQSKLKTIQTTDPKNEKTLLDIFTGVKLYLPESVQDFEKLRRYF
LAYDGDLVPEYDSGSATHTLEKPDDDSSAHRVTSNWIWECIRKRRVVPPC
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtttttgttttggcagactagtgaggacaataagcagatcatctttgccaaca
ctttttagggaaactgtattcagagcaacactaaatcgtcaaaatctccagtgctcgagg
gctcttacatttacgtggggctttgcatctagccccagtggcatctttttctgtgtgcca
caatttcgacagtttactttcagctccggctcttatttccacgtttcttggcctgagtgg
caacgtgaacaaccagacatggcagagcaaaggtactgcgtggaatatgccaaacgtggc
actgctgggtgcaagaaatgcaaagacaagatcatgaagggcctggtccggattggcaag
attgtgccaaacccgttcagtgagtctgcaggggaaatgaaggagtggtaccatgtaaag
tgcatctttgagaagctggagagagcgcgtgccaccacaaagaaaatcgaggacatcacg
gagctggagggatgggaggaacttcaggatgaggataaagatctaatcaataaacatgtt
tcagaactggcagccaaaaccaatgcaaccccaaagaagaaagtgcaagcaaagttaaac
aacagtggacagctgtcagcaccgctagctgatccaacagtcaatgctcctcgcaagttt
tctggcttcacagctaccaaggctggttcctcttcctccagtcctggaccgtctccagcc
aaacccactcagggcagtgctttatcggctcagctatgtgaccccaaacataaagacaac
ttactgcgggagttccgcaaactctgtgccttagtcgcagagaagtcaggctacaacgcc
aagacagagatcatcagagacttcttagcaaaaggctctggtggagacaaattcagagga
gatttatacctgacagtgaagcttctcctcccaggagtggtgaagaatgtgtacaacctc
aatgacaaacaaattgtcaaacttttcagccgtatattgaattgcaatcaggatgagatg
gtgcaagacttggaacagggagatgtttcagagacagtgcggatgtttttcgaggacagc
aagtctttccctccagcagccaagagtcttttgaccatccaggaagtagatgcttcactg
agccgtctatcccagctcacaaaggaggatgatcagcaggcagagctgcaggacattgct
aaaaaatgtaccggaaatgatctgaagtgctacattcgtttggtcaaacatgatctgaaa
atcaactcgggggcaaagcatgttttggatgctgtggaccctaacgcatacgatgccttc
aaagcctcccgtaaccttggtgacgtaatcgacagggtgctacggaaccagcaggaagcc
tctaatggatcagggccccgaaagatccttagcgtggaggcgtctctgatgacccccgta
cagccaatgctggcagaagcatgcaagtccattgagtatgccatgaagaagtgtcctaat
gggatgtactctgagatcaagtatgatggtgagcgtgtgcaggtccataagaacggcgat
catttcagttacttcagtcgaagtctcaaaccagtacttccacacaaggttgctcatttt
aaagagttcataccacaggcatttcctggtggtcatagcatgatccttgatgctgaagtt
cttcttattgacacaaggtctagcaaaccactgccttttgggactcttggagtacacaag
aaagcagctttccaggatgctcaagtgggtctgtttgtgttcgactgcatttattttaac
ggtgtcagtctcatggacaaacccctctgtgaaagaagaaagtttctccatgacaatatg
gtggaagttcctaacaggattctgttctcagaaatgaagcatgtcacgagagctgctgac
ctggcagaaatgatcacacgtgtcatcagagagggactggaggggttggttctgaaggat
atcaaggggcattatgaaccaggaaagcgtcactggttgaaggtgaagaaggactatctg
aatgaaggagcaatggcggacactgctgaccttgtggtgcttggagctttctatggcaaa
ggctcaaatggtggaattatgtccagtttcctcatgggctgctatgaccctgaatccagg
aagtggtgcactgtgaccaagtgttcaggaggctatgacgacgccacgttagccagactg
cagaaggagttggacgttatcaaaataggcaaggatccaagcaagatcccaggatggttg
aagattgtcaagaactattacccggatttcattatccgtgatccagaaaaagcgccagtg
tgggaaataacaggagcagagttttccaaatcagaaatgcacactgcagatggcatatcc
atccgcttcccacgatgcactcgaatgcgtgacgacaaggactggaagacagccactaac
cttcagcagctcaaggagctgtatcgtatctcgaaggaaaactgtgattttgaggtaacg
gctggtccgtccaaaactagccaaaatgacaagagctcctcaggaggtgagagtggagga
agctctccctcagcatctcatggagcttcctcagctaagactaaaaatggtcatacccca
aaagcaaaggcagtgaaaacagaatcatcctctccagcagttaagaggaaactacccact
gagaaacaaaatgccaagaagataaaaacagaacctgctcacagcaatggacaaagtaaa
ttgaagaccattcaaacaaccgacccaaagaatgaaaagacactactggacattttcaca
ggcgtgaagctctacctcccagagtcggtacaggactttgagaagcttcgccgttacttc
ctagcgtacgatggagatctggtgcctgagtatgattccggttcagccacgcatacactg
gagaagccagacgacgacagttcagcccacagggtcacctccaactggatctgggaatgc
atccgaaagaggagggtggttcccccttgctga
DBGET
integrated database retrieval system
