Megalobrama amblycephala (Wuchang bream): 125267927
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Entry
125267927 CDS
T08212
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125267927 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mamb03041
]
125267927 (prpf4)
Spliceosome [BR:
mamb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
125267927 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_EML
PRP4
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
125267927
NCBI-ProteinID:
XP_048045958
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Position
LG4:53690176..53697279
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AA seq
507 aa
AA seq
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MSDEDEAPVVKRARIFYGSLEEKERERLSREGTSLSAKDAVKAGIAAGHINISSGESMEM
EERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPAERRERLRN
ILSVLGPDALKKSKKEDEKAKRSQEEYQQTWYHEGPSSLKEARLWLAKYSLPRAVQRLDA
ARAQKEIPESTRTVKQQELHKNLRNVNNFCSQIGDDRPISHCQFSPNSKLLVTASWSGLC
KLWKVPDCTLIRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGSVKLWSLDSDEP
VADIEGHTMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFARVWDLRTGRCIMFLEGHLKEIYSLNFSPNGFHVATGSGDNTCKVWD
LRQRRCIYTIPAHQNLVSSVKFQPNDGHYLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSYDRTFKLWMSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaagctccagttgtgaaaagggccagaatcttctatggaagcctt
gaagaaaaggagagggagcgtcttagccgtgaaggaacatctctctctgccaaagatgct
gttaaagctggcattgcggctggacatattaatatctccagtggtgagtccatggagatg
gaggagcgtgtgagtgagcgacaggctgaagtgctggcagagtttgagcgcagaaaaaga
gccagacaaatcacagtctccactgatgatgtggaggtcaaggcctgcctccgagctctt
ggtgaaccaatcacactgtttggggaggggcctgcggagagacgagagagattgaggaac
attctttcagtacttggtcctgatgccttgaagaaatcgaagaaagaggatgaaaaagca
aaacgctctcaagaagagtatcagcagacatggtaccatgaagggccttcatctctgaag
gaggcacgtctttggttagccaagtattcactgcccagagcagtgcaaaggttagatgct
gcaagggcccaaaaagagattccagagtctacaagaacagttaaacagcaagagcttcac
aagaacctccggaatgtcaacaacttctgcagccaaattggtgatgaccgtccaatatct
cactgccagtttagccccaactctaagctgcttgtgactgcgtcgtggagtggcttgtgc
aaattgtggaaagtcccagattgtacactgatacgcacattaagaggtcataatactaat
gtgggagcgattagctttcaccctcaagccacactcacacttgaggagtcagatgtcaat
atggcctcctgtgctgcagatggatctgtcaagctgtggagtttagacagtgatgagcca
gtagcagacattgaggggcacactatgagggtggctcgggtggcctggcatccttctgga
cggtttttgggtacaacttgctatgataactcgtggagactttgggatcttgaggtccaa
gaagaaattctgcatcaagagggtcatagtaaaggtgtccatgacctgcacttccaccca
gacggctctctggcaggaactggtggtttggattcatttgcccgtgtctgggacctgcgg
actggtcgttgcatcatgttcctggagggccatctcaaagagatttacagccttaatttc
tcaccaaatggctttcatgtggcaacaggaagtggcgataacacctgcaaagtgtgggac
cttcgtcagaggaggtgtatttacacaatccctgcccatcagaacctcgtgtcctcggtc
aagttccaacctaatgatgggcattatttgctgaccggtgcgtatgacaacacagcaaaa
gtgtggacccatcctggctggtcacctctgaagactctggcggggcatgaagggaaggtc
atggggcttgacctttcacctgacggacagctcattgcaacctgttcatatgaccgaacc
ttcaaactctggatgtcagaatga
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