Megalobrama amblycephala (Wuchang bream): 125268540
Help
Entry
125268540 CDS
T08212
Symbol
dicer1
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mamb03036
]
125268540 (dicer1)
Chromosome and associated proteins [BR:
mamb03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125268540 (dicer1)
microRNA pathway
RISC loading complex
125268540 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SLFN-g3_helicase
DSRM_2
dsrm
Motif
Other DBs
NCBI-GeneID:
125268540
NCBI-ProteinID:
XP_048046765
LinkDB
All DBs
Position
LG5:complement(15162341..15203711)
Genome browser
AA seq
1880 aa
AA seq
DB search
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLIKELSHQIRGEDRKRTVFLVNAASSVVQQASTVRTHSDLQVGDYMSEEMTTWP
EEIWNREMMGNQVLVMTCHIFLHVLKNGVLPLSKINLLVFDECHLAITDHPYQEIMKICE
GCPGCPRILGLTASILNGKCDPCDLEEKIQNLEKILQSNAETATDLVVLDRYASQPREVV
LDCGLYHDQSGLSDRLLSELDEALHFLNDCNLSTHREDRDPTFISKQVLNDCRAVLTVLG
PWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVT
PKVIRLLDILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEAEAKEKPEANF
PSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQM
EVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRAR
APVSNYIMLADSERTKTFEEDLKTYKAIEKILRNKCSKSAECNEFELEPVTDDDNVLPPY
VLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVELKTGGYRSTLFLPINSP
LRVPVTGPTMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEET
NVPGRPGSTKRRQCYPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYP
PEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLSAEQLELITRLHQYIF
SHILRLEKPALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQY
TKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKT
KYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILV
PELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNL
DFGWKKSIDSKSFISCPSACMEDDDHCKHGSSSDSDHTAEESCSTEASQPPEGALPCENC
NTPDEKLETQVLPVTDVQTLNKDKSNCVCFRNLPNSTWGDSDDLPHRHDICQCSQLGPLE
SDLSTQTTTSVPVRPSPVGEPQPQPSDECTPGRNSDLCDRHVKKPTSNCCPKPETATSTT
APLEVSSEVSDVTSTTTCTGPAWDSPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDS
FLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWL
PPGYVVNQDKSTTDKWDSDENKDLANGKASDEEDDDDEAEDVEVEPSKEEVNVEDDLEYY
YEHIRFIDNMLIGSGAFGKKISLQPAEPGCEWKAPKKAHNSHFSPDGGADEFDYSSWDAM
CYLDPSKAGEEDDFVVGFWNPSEENCGTDIGKQSISYDLHTEQCIADKSIADCVEALLGC
YLTSCGERAAQLFLCSLGLKVLPAEKQSSGGSAELQYGWLKIPPRCMFDHPDAERTLNHL
ISGFENFEKKINYMFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYE
DPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEM
QGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI
EKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKS
AAARRALRSLKANQPQVQNN
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atggctggcctacagctggtgacccctgcctcctcacccatggggcccttcttcggtctc
ccgtggcaacaggaagctatccatgacaacatatacacaccaagaaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactatagtctgcttaaatactggctcagggaag
acctttatcgcagtactcctaatcaaagaactctcccaccaaatccgtggagaggataga
aagagaacagttttcctggtgaatgcagcatcatctgtggttcagcaagcatctactgta
agaacccactctgatctccaggtaggcgactacatgtcagaggaaatgacaacatggcct
gaggagatatggaacagagagatgatgggaaatcaggtgctggtgatgacgtgccacatc
ttcctgcatgtgttaaagaatggagtcttgccactatcaaaaatcaacctgctggttttt
gacgaatgccaccttgcaatcacggaccatccttatcaggaaataatgaagatttgtgag
ggttgcccgggctgtcctcgcattttgggtctgactgcttccattttaaatggcaaatgt
gacccttgtgatctggaggagaagattcagaacctggagaagattttgcagagcaatgca
gaaactgccaccgatcttgtggtgctggataggtatgcgtcccagcctcgtgaggtggtg
ctggactgtgggctgtatcacgatcagagtgggctctctgataggttattgagcgagttg
gacgaagcccttcattttcttaatgactgcaacttatctactcatcgagaagatagagac
cccacgttcatctccaaacaggtgctgaatgactgtcgtgccgtgttgactgtgctgggc
ccttggtgcgcagataaagctgcgggaatcatggtccgggagctgcagaaatatatcaaa
catgaacaggaagagctgaaccgcaagttcctgttgttcacggacaccattctgagaaaa
atccacgcattatgtgaggagcatttctctccagcttccctagacctgaagtttgtcact
cccaaggtcatcagacttctggatattctccacgagtacaaaccttttgaacggcagcag
tttgagagtgtggagtggtacaacaatcgcaatcaggacaattacgtttcttggagcgat
tctgaggacgatgacgaggatgaagaggcggaggcaaaggagaagcctgaagcaaatttt
ccctcgcctttcaccaacatcctctgtggaatcatctttgtggaaaggcgatatacagcg
gtggttttaaacagacttattaaggaggcagggaagcaggacccagagctggcttacatt
agtagcaacttcatcacaggtcacagcattggcaagaaccagcctcgcaacaaacaaatg
gaggtggagttcagaaaacaagaggaggtcctgaggaagttcagagcacatgaaaccaac
ttgctcatcgcaaccagcattgtggaagaaggtgttgatattccaaagtgcaatttggtt
gttcggtttgacctgccgacagagtaccggtcctacgtgcaatccaaaggtcgtgcccgt
gctccagtctccaattacatcatgctcgctgacagcgaacggacaaaaacatttgaagaa
gacctcaagacctacaaggccatagaaaagatcctccgaaataagtgctcgaagtcagca
gaatgcaatgaatttgaattggagccagtgaccgatgatgacaacgttctcccaccttac
gtcctgcgctcagaggacggaggccctcgcgtcacgattaacacagccattgggcacatc
aacagatattgtgcgcgtttgcccagtgatccgttcactcatcttgctccgaagtgtaaa
actgtggagctgaagactggaggttatcgatccacactcttcctacccatcaactcacca
ctcagagttcctgtcactgggccaacaatgaattgtgcaagacttgcagagaaagctgtc
gctcttctctgttgtgaaaaactgcacaaaattggtgaactggatgatcatttgatgcca
gtgggaaaggaaactgtaaagtatgaggaggagctggacctgcatgacgaggaagagacg
aacgtgccaggaagaccaggctccaccaaacggagacagtgttacccaaaagccatacca
gagtgtctgcgggggtgttaccctgtgccagagcagccttgttacctttacgtcataggg
atggtcctcaccacccctcttcctgatgagcttaacttccggcggaggaagctgtatccg
ccagaggacactacccgatgttttggcattctaacagctaaaccaatacctcggatccct
cacttccctgtgtatacacgttctggtgaggtgaccatctcgattgagcttcagaagtcg
ggcttcactctgagcgcagagcagctggagctgatcacacgtctgcaccagtacatcttc
tcccacatccttcgtctggaaaagccagcactagagtttaagcctgtagaggcagattct
gcctactgcgttctacctctcaacattgttgaggattccaataccttggacctggatttc
aagttcatggaggatattgaaaagtctgaagcacgcattggcattccaaatactcagtac
accaagcaaaacccattcattttcaaattggaggactaccaggatgctgtcatcattccg
aggtatcgtaattttgaccagccacatcggttctatgtggctgacgtttacacagacctc
accccgctcagtaaattcccctctccagagtatgagacttttgctgagtactacaaaacc
aagtacaacctggacctgtctaatgttaaccagcctctactggatgtggaccacacatct
tcaagattgaatcttttaactccccggcaccttaatcaaaaggggaaagcccttcctctg
agcagtgcggagaagagaaaggccaagtgggaaagcctacaaaacaaacagattttagtt
ccggagctctgtgccattcaccccatcccagcttctttgtggaggaaagctgtctgcctt
cccagcattctctacagacttcactgccttctgacggccgaagagctgcggtctcagaca
gccattgatgctggcgttggggctcagaccctgcctcctgatttcaggtatcctaatttg
gatttcggatggaagaaatccatcgacagcaaatctttcatttcctgccccagtgcatgt
atggaagacgacgatcactgtaaacacggctcaagctcagattcagaccacactgccgag
gagagctgcagtacggaggcctcccagcctccagagggcgctctcccttgtgagaactgc
aacacaccagatgaaaagctagaaacccaggtgcttcctgtgactgatgtccagacgctg
aacaaagacaagagcaactgcgtctgtttccgaaacctccctaacagcacttggggcgac
agtgacgacctcccacacagacatgacatttgccaatgctctcagctgggccctctggag
agtgacctatcaacgcaaaccactacctcagttcccgtgcggccctctccagtcggcgag
ccacagccccagcccagcgatgaatgtaccccaggcaggaactcagatctctgcgacaga
catgtgaaaaaacctacctcaaactgttgccccaaaccagagacggcaaccagcaccaca
gcacctttagaagtgtcatcagaggtatctgacgtgacatctacaacaacctgcacaggt
ccagcctgggattctccgaaaaccttgggccccaaccccggcctcatcttgcaggccctg
accctctccaatgccagtgacggcttcaatctggagaggttggagatgttgggcgactct
ttcctgaaacacgccatcaccacctacctgttctgcacttatcccgacgcccatgagggc
aggctgtcatacatgagaagcaagaaggtcagcaactgtaacctttatcgcctggggaag
aaaaagggccttcctagtagaatggtggtatctatctttgatcccccggtaaactggctt
cctccgggctacgtggtgaatcaggacaaaagcaccacggacaagtgggactcagatgag
aataaagatttggccaacggaaaagccagcgatgaggaggatgacgacgatgaagcggag
gatgtggaggtcgagccttctaaagaagaggtcaatgtggaagatgatctggagtactac
tatgagcacatcagattcatcgataacatgctgattggctccggcgccttcgggaagaag
atctccctacagccggccgagcctggctgtgaatggaaagcacccaaaaaagctcacaac
tcccacttttccccagacggtggcgctgacgagttcgactacagttcctgggatgccatg
tgctacctggaccccagcaaagctggcgaggaggatgactttgtggtgggcttctggaac
ccttctgaagaaaactgtggcacggatattgggaaacagtccatctcctacgacctccac
accgagcagtgcatcgctgataagagcatagccgactgtgtggaggccctgctggggtgc
tacctcaccagctgtggggagagggcagcccagctgttcctgtgctcccttggcctgaag
gtgctcccggcggagaagcagagttcaggggggtcggccgagctgcagtacggctggctg
aagatccctccacgctgtatgttcgaccacccggatgccgagcggaccctcaaccacctc
atttcaggcttcgagaactttgagaagaagataaactacatgtttaaaaacaaggcatat
cttctgcaggccttcacccacgcctcgtatcattacaacaccataacagattgttatcag
cggttggagttccttggtgatgcaattttagactacctcataacaaagcacctttatgaa
gatccccggcagcactctccaggcgtgctgaccgacctgcgctctgcacttgtcaacaac
accatatttgcttccctggctgtcaagtacgattaccacaagtacttcaaagctgtctcg
cccgaactgttccacgtgatcgatgattttgtgcaatttcaactggagaagaatgaaatg
caaggaatggattcggagcttcgccgatcggaagaagatgaggagaaggaagaagacatt
gaggtccccaaagcaatgggagacatctttgaatcgctagctggtgcaatttacatggat
agcgggatgtcacttgagacagtttggcaagtgtattatccaatgatgaggccgctcata
gaaaaattctccgctaatgtccctcgatccccagtgcgtgaactcctggagatggaacca
gagactgcgaagttcagccctgcggagagaacctatgatggaaaagtacgggtgaccgtg
gaagtggtgggcaaaggcaagttcaaaggcgtgggacgcagctaccggatagccaagtca
gcagctgcccgccgagccctgcgcagtctcaaagccaatcaacctcaggtccaaaacaac
tga
DBGET
integrated database retrieval system
