Megalobrama amblycephala (Wuchang bream): 125268676
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Entry
125268676 CDS
T08212
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03015
mRNA surveillance pathway
mamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125268676 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
125268676 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125268676 (pabpc4)
03041 Spliceosome [BR:
mamb03041
]
125268676 (pabpc4)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125268676 (pabpc4)
mRNA cycle factors
Stress granule specific factors
125268676 (pabpc4)
Spliceosome [BR:
mamb03041
]
Complex C
Other components
Complex C specific factors
125268676 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RRM_occluded
RBD_RDR6
OB_RNB
POP1_C
Motif
Other DBs
NCBI-GeneID:
125268676
NCBI-ProteinID:
XP_048047016
LinkDB
All DBs
Position
LG5:19630786..19659109
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AA seq
637 aa
AA seq
DB search
MNAATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAEMGAKAKEFTNVYIKNFGEDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYE
KHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRT
TYYAPNQLTQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRANIRHLAPNASTQGPRGIP
TGAQRVGGTGQPMGPRPAMGVTTPRAMPPYKYATTIRNTQPQVVQPITLQQAQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHE
SLRSKVEEAVAVLQAHQAKKDATQKVGVTAATAAATS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagcgaccgcggggagttatccgatggcttctctctatgtgggcgacctgcac
cctgatatcacggaggctatgctgtatgagaaattcagtccggccggcccggtgctgtcc
atccgcgtgtgtcgggatatgatcacgcggcgctcgctgggctatgcctacgtcaacttc
cagcagcctgcggacgcggagagagctttggacacaatgaacttcgatgtggtcaaagga
aagccgatcagaatcatgtggtcacaaagagatccatcacttaggaaatccggggttgga
aatgtcttcatcaaaaatctggacaaatccattgacaacaaggccctgtatgataccttc
tctgctttcggaaacatcctgtcctgcaaggtggtgtgcgatgagaacggatctaagggc
tacgcctttgtgcattttgaaactcaggacgcagctgaccgtgccatcgagaagatgaac
ggcatgctgctgaacgaccgcaaggtgtttgtgggccgtttcaagtccaggaaggagagg
gaagcagaaatgggtgccaaagccaaagagttcaccaatgtttacatcaagaacttcggc
gaggacatggatgatcagagactgaaggagctctttgataaatatggtaaaacactgagc
gtgaaggtcatgaccgaccccacagggaaatcgcgcggatttgggtttgttagctacgag
aagcatgaggatgctaataaggctgtagaagacatgaacggtacggagctcaatggcaag
acagtgtttgttggccgagcacagaaaaagatggagagacaagcagaactcaagaggaag
tttgaacagctcaaacaggaaagaatcagcagatatcagggtgtaaatttgtatatcaag
aatcttgatgacaccatcgatgatgagaaacttcgtaaagagttctctcctttcggctcc
attaccagtgccaaggtgatgttggaggacggcaggtccaaaggttttggctttgtgtgt
ttctcctcacctgaggaggccacaaaggccgtgacagagatgaacgggcgtattgtgggc
tccaaaccactgtacgtggccctggcccaacgtaaagaagaacgcaaagctcatctgacc
aaccagtacatgcagcgcatcgctggcatgagggccatgcctgccaacgccatcatcaac
cagttccagcctgccggcggttacttcatgccagctgtgccacaggcccagaacagaaca
acatactatgcaccaaaccagctcacccagatgcgtccgaaccctcgctggcagcagcag
ggtggcagaggtcagggtggcttccagggcatgcccagctccttgcgccagccagggccc
cgtgccaacatacgccacttggcacctaatgcgtccacccaaggcccacgcgggatcccc
acaggtgcacagagagtgggaggcactggccaaccaatgggtcctcgccctgccatgggg
gtgacaaccccacgtgctatgcccccatacaagtacgccaccaccatacgaaacactcag
cctcaggtagtgcagcccattacacttcaacaggctcagccggccgttcatgtgcagggt
caggagcctctgactgcctccatgttagctgccgcccctcctcaggaacagaaacagatg
cttggtgagcgattgttccctctcatccaggcaatgcaccccagtctagccgggaagatc
acaggaatgcttcttgagatcgacaactctgagctgctgcacatgctggagtcccatgag
tctctgcgctccaaggtggaggaggctgttgcagtgcttcaggctcatcaggccaagaaa
gacgccacacagaaagtgggagtcactgctgcgactgcagccgcaacatcttga
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