Megalobrama amblycephala (Wuchang bream): 125270164
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Entry
125270164 CDS
T08212
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03013
Nucleocytoplasmic transport
mamb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125270164 (upf3a)
03015 mRNA surveillance pathway
125270164 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125270164 (upf3a)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125270164 (upf3a)
mRNA cycle factors
P-body specific factors
125270164 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
125270164
NCBI-ProteinID:
XP_048049416
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All DBs
Position
LG6:complement(23070926..23078874)
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AA seq
481 aa
AA seq
DB search
MRSEKEQRTGSRERGSVEIQFRECQREQDNVAVNPKHKEEKKEVFTKVVIRRLPPSLSKD
QLEEHLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNQEDIIIFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEAEKQKKLSEKEIKIKLLKKCDRDDDVDSDRLKDKGDSGEMEKNRWEKSAGHTKSK
DSKDNRSQIESDKEQREGHGRRQRDKEHRGRDEERKRQRHHYEFDKFMRRKEETKWGKGY
CQDRAKKEQHHGYSYCPETGDKLGKEDREDMGSRKERIRNKSVLAHQEKRTSQSEGPDQI
GGALPAKDRPAMQLYQPGARNRKRMGSGNKAFDFPPISPEHGGEHCYKTVIGTGSEKSAD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggagcagaggacaggaagcagggagagaggcagcgtcgagatccag
ttcagggagtgtcagagggagcaggacaacgtcgcggtgaacccgaagcacaaggaggag
aaaaaggaggtattcaccaaggttgttatacgccgactgccacccagtctatcaaaagac
cagcttgaggagcatctgagtcctcttccatcttttgactattttgagttcttccccgct
gatcagagcttatatccgcatctcttctcaagagcatacatcaacttcaaaaaccaagag
gatatcattattttcagagatcgttttgatggctatgtattcattgacaataaaggccaa
gagtatccagctgttgtagaatttgccccatttcagaaggtttccaagaaaaagttaaag
aagaaagatgctaaagcaggaactattgaagaagacccagaatacaggcgatttctggaa
aactactcttgtgatgaagagaaatccatggccaacccagaaacactactgggggagatt
gaagctaaaacccgagaacttatagccaaaaggacgacacccttgttggaatacatcaaa
aacaagaaattggagaaacagagaataagagaggaaaaaagagaggagaggcgaaggaga
gaactggaaaagaagcggcaaagggaggaggagaagaggaaacgcagagaggaggagaga
cgaaagcggaaggaggctgaaaaacagaagaaactgtctgaaaaagagattaagatcaag
cttttaaagaagtgtgaccgagacgatgatgtggactcagacagactgaaagataaagga
gacagtggagagatggaaaagaacagatgggaaaagtcagctggacacactaagtcaaag
gattcaaaggataacaggagtcaaatcgagagtgacaaggagcagcgggaaggtcacggc
cgtcggcagagggacaaagagcatcgcggcagagacgaggaacgtaaacgtcagaggcat
cactacgagtttgacaagttcatgcgacgcaaggaggagaccaaatggggcaaaggctac
tgccaggacagggccaagaaagaacaacatcacggctattcctactgtccagagaccgga
gacaaacttggcaaagaggatcgagaagacatgggcagcaggaaagaacggattcgcaat
aagtctgtgttagcgcatcaggagaaaaggacttcccagtctgaggggccagaccagata
ggaggggctctgccagcaaaggaccgaccagcaatgcagctgtaccaacctggtgccaga
aaccgcaagcgcatgggctccgggaacaaggcctttgacttcccgccaatctctcccgag
cacggaggagaacattgctacaagacggtcattggtacaggctcagaaaagagtgctgat
gagtga
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