Megalobrama amblycephala (Wuchang bream): 125270368
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Entry
125270368 CDS
T08212
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125270368 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mamb03041
]
125270368 (sf3b1)
03036 Chromosome and associated proteins [BR:
mamb03036
]
125270368 (sf3b1)
Spliceosome [BR:
mamb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125270368 (sf3b1)
Complex B
125270368 (sf3b1)
Complex C
U2 SnRNP specific factors
125270368 (sf3b1)
Chromosome and associated proteins [BR:
mamb03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125270368 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
125270368
NCBI-ProteinID:
XP_048049828
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All DBs
Position
LG6:complement(30636598..30647217)
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AA seq
1315 aa
AA seq
DB search
MAQIAKTHDDIEAQILEIQGMKAALAEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEEDDDEDSSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KKRRQKMIISPERHDPFADGGKTPDPKMQVRTYMDVMKEQHLSKEEREIRLQMVEKAKSG
ELKAVNGSAASQAAVAKRKRRWDQTADQTPSNATPKKMSSWDQADGSSETPGHTPGHTPS
NSRWDETPGRPKGSETPGATPSTRMWEPTPSHTPAGAATPGRDTPGHATPGHGGASSSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQTEDRSMKQVNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVFNDEKNSYVRYELDYFL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagatcgccaaaacacatgacgacatagaggctcagatcctggaaatccagggg
atgaaagccgccctggcagagggagctgatcagggagtcgggcttgattccactggatat
tatgaccaggagatctacggaggcagtgacagccgctttgctggatatgtgacttcaatt
gctgccaatgagcaggaagaagatgatgatgaagattcttccacaagtctgcttggacag
aagaaaccaggatatcatgcaccggttgcaattctcaattccattcctcagtcagatgag
cagtatgatccttttgctgaacacagaccacagaagatttcggaccgcgaggacgagtac
aagaagcgcagacaaaagatgatcatctccccagagcgtcacgacccgtttgctgatggg
ggcaaaacaccggaccccaagatgcaggtcaggacgtacatggatgttatgaaggagcag
catctgtccaaagaagagagagagatcaggctgcagatggtagagaaagcaaaatctgga
gagctgaaagcagtgaacggctctgctgcttctcaggctgctgtggccaaacgcaaacgt
cgctgggatcagacagctgaccaaacccccagcaacgccacacccaaaaaaatgtccagt
tgggaccaggcagatggatcttctgaaacacccggacatacacccggacacacaccttcc
aacagtcgttgggacgagacaccaggccgtcccaaaggtagcgagaccccgggagccact
cctagtacccgtatgtgggagcccacaccgagtcacaccccagctggagctgccacacct
ggtcgagacacccctggacatgccactcccggacatggaggggcctcttccagcgtgcgc
aaaaacagatgggatgagacaccaaagacagagagagagacacctggtcatggcagtggc
tgggctgagactccacgtacagatagaggagatgagtcagtgggtgagacgcccaccccg
ggtgcaagcaagaggaagtcaagatgggatgaaacaccagccagtcagatgggctcttca
actcctctgctcacccctggaaaaacccctctgggtacacctgccatgaatatggccacg
cccactccaggccacctgatgagcatgactccagaacagctgcaggcttggcgctgggag
cgagagattgatgagaggaaccgcccattgactgatgaggaactggatgccatgtttcca
gaaggatacaaagtgctgcctccacctgcaggctacgtgcccatccgcacccctgcgcgt
aagctagctgccactcccacccctatcggaggaatgactggcttccacatgcaaacagag
gacagatctatgaaacaagtcaacgaccagccctctggaaacctgcccttcctcaagcca
gatgacatccagtactttgacaaactgttggttgaagttgatgagtccaccctcagtcca
gaagaacagaaggagcgcaagatcatgaagttgcttctgaagatcaagaatggaacacct
cccatgagaaaggctgctcttcgtcaaatcacagataaggccagagagtttggtgcagga
cccctatttaaccagatcctgccactgctgatgtctcctacactggaggaccaagagcgt
catctattggtgaaagtcattgatcgtattctctacaagcttgatgacttggttcgacca
tacgtccacaagattcttgtggtgattgagcctttgttgattgatgaagattactatgct
agagtagaaggtagagagatcatctccaacttggcaaaggctgccggtctggccaccatg
atttccaccatgaggcctgacattgacaacatggacgagtatgtgagaaatacgacagct
cgtgcttttgccgtcgtggcgtctgccctgggcattccgtctctcctgcctttcctcaag
gctgtttgcaagagcaagaaatcctggcaggctcgtcacacaggcatcaagatcgtacag
cagatcgctattctcatgggctgtgctatcctgccccatctccgcagcttggtggagatt
atcgagcatggtctcgtggatgagcagcagaaagtgcgaaccatcagtgctctggctatc
gctgccctggctgaagctgctacgccgtacggtatcgagtcctttgattctgtgctgaaa
cctctttggaaaggtatcaggcaacacagaggcaagggtcttgctgcctttttgaaagct
attggatatttgattcctctgatggatgctgaatatgccaactattacaccagagaagtg
atgcttattctcatccgagagttccagtctcctgacgaggagatgaagaagattgtcctc
aaggtggtgaagcagtgctgtggcactgatggtgtggaagccaattacattaaaacagag
atcttgccgcccttctttaaacatttctggcagcacagaatggcgttggataggcgcaac
tacagacagttagtggacactacagtggagctggccaataaggtaggcgcagctgagatt
atctcccgtatcgtggatgacttgaaggatgaagctgagcagtacagaaagatggtgatg
gagaccattgagaaaatcatgggcaaccttggtgctgctgacatcgatcacaaacttgag
gagcagcttattgacggtatcctgtacgcctttcaggaacagaccactgaggactctgtg
atgctgaatggctttggtacagtggtgaatgctcttggtaagagagttaaaccgtacttg
cctcagatctgcggtacagtgctgtggcgtctcaacaacaaatccgccaaagtccgtcaa
caggctgctgacctgatttctcgcacggcggtggtcatgaagacatgccaagaggaaaag
ctcatgggccatttgggtgtggtgttgtacgagtatctgggagaagaatacccagaagtg
ctgggtagcattcttggagctcttaaagctatcgtcaatgtcattggtatgcacaagatg
accccacccatcaaagacctgcttccacgtttgactcccatcttgaagaacagacatgag
aaggtgcaggagaactgcattgatctagtgggcagaatcgctgacaggggtgcggagtac
gtgtctgccagggaatggatgcgaatctgttttgaattgctggagttgttgaaagcccac
aagaaggccatccgcagagctactgtcaacactttcggctacatcgccaaggccattggt
cctcatgatgtgttggccacactgctcaacaacctgaaggttcaggagcgtcagaaccgt
gtgtgcacaacggtagccatcgctatcgtggccgagacgtgttcgccattcaccgtgctt
cctgcgttgatgaatgagtaccgtgttcctgagcttaacgttcagaacggtgtcctaaag
tctctgtccttcctctttgagtatattggtgaaatgggcaaagattacatctatgccgtc
acacccctgttggaggatgctctgatggatagggatctagtacacagacaaacagccagt
gctgtggtgcagcatatgtctctgggagtttatggctttggctgtgaagattctctcaat
catttgctcaactatgtttggcccaatgtcttcgaaacgtctcctcatgtcatccaagct
gtaatgggggccctcgagggtctgcgggtggcaattggaccttgccgcatgctgcagtat
tgcttacagggtttgttccatcctgctcgcaaagtgcgtgacgtgtactggaagatctac
aactccatctatatcggctcccaggacgcactgatcgcacattatcctcttgtcttcaac
gatgagaagaactcatacgttcgctatgagctggattacttcctgtga
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