Megalobrama amblycephala (Wuchang bream): 125270629
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Entry
125270629 CDS
T08212
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mamb04147
]
125270629 (col18a1a)
00535 Proteoglycans [BR:
mamb00535
]
125270629 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125270629 (col18a1a)
Exosome [BR:
mamb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125270629 (col18a1a)
Proteoglycans [BR:
mamb00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125270629 (col18a1a)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125270629 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
125270629
NCBI-ProteinID:
XP_048050396
LinkDB
All DBs
Position
LG6:36237335..36333281
Genome browser
AA seq
1770 aa
AA seq
DB search
MSELRFWLCLFIVVCLRICHTHGWFWYDDSNAKGTKTPAYLSTLRPISPPRTEPPRTAGT
SASVTVVEKEVSYNGGHFEGESEFISRSGLGVESESVNGSEFASGSGSGSSQFERQDAYV
TSTNVSGIAGENASLHVGNLKLETKADQMDGLQSGSDPAYSQFNESINVKNVSTYNNNNN
TEHDEYDNTTLYSSEYSVSDNLLTIESEYFVARMPVVESSRCLPVDPDLPFCTRTREESF
MVPNFLNQSSVEEVQVVLTQWAWLLRSNCHHSLEWFFCLLLTPRCGPPGLPPPLPCRSFC
EVLRDSCWTLLDEGRLPVECHSLPEEKHDGYRCLSVSNQKEESGVSLLQLTGDPPPDGVT
KTFEHDNSPSYMFGPNANVGQSAAAHLPNPFYRDFSLIFNIKLMSAKPGVIFSITDPTQN
IMYVGVKLSAVKNGKQEIIFYYTEPDSQSSYEAARFTVPSMSMTWTRFSISVLNEKVSLY
FNCDSDPQVINFERSPDDMELNARAGVFVGHASGADPDKFVGVIGDLRVVGDPGAAERHC
EEEEDDFDANLQGSGDFGASGDGDRPPSVQPTPPSSRPIQQPPVTSRTLVEKQQTGSVDS
SRQTGSYGGSRKTSDSYGDPRKTSVSYGDSRQTSGSYGDSEQTSGSYGDSQQTSGSYSGS
RQSSGTYGGSRQTLDSVAVSKQTSGSYDDSRKASNSLRTSGSADDGIRYSVESRLGSAGP
TGSIGARGEKGDRGEKGVKGDRGLTGPKGDSGSGSVSGGAAKGEKGDTGEKGIKGSSGFG
YPGSKGDRGPAGPPGPPGPPGPSAEVEVRGDGSVLQKVAGPRGPPGPPGPPGVDGEPGDP
GEDGKAGQVGPPGFPGTPGPKGEKGDRGESQPGPRGPPGPPGPPGPPSRSDRPTFVDMEG
SGFDMDSVRAMPGLPGPPGPPGPPGPPGLASSGSGGFGPPGPPGQNGAPGQPGLPGPPGA
DGKPGSPGPRGEKGDAGELGLPGPVGEKGATGSPGSPGLNGQGGLAGLPGPMGPVGPPGP
PGPPGPSFVGFDDMEGSGIHFSSVPGIRGPVGIQGPPGIPGPQGKPGFPGFPGEKGSEGP
QGQDGRPGLDGFPGPQGPKGDRGDRGERGEPGRDGTSVPGPPGPPGPPGQIIYRYSETDD
EIGVAGPQGGPGRPGQAGFPGPMGPKGDRGEPGSPGYAIKGDKGEPGIILGPDGNPFHLG
GSVGQKGERGIPGPVGPPGPAGPPGLKGEFGMPGRPGRPGVNGYKGEKGDSGSGTGYGYP
GPPGPPGPPGPPGPAVPLDRFGRYEDYSRQYTATKGEKGDQGAPGIPGSPGLSSNFDIYA
LKNEMKGERGESGLKGEKGEPGGGFYDPRFGAVQGPPGNPGLPGPKGDSIRGPPGPQGPP
GPPGVGYDGRPGNPGPPGPPGPPGSPSLPGAYRPSLSIPGPPGPPGPPGIPGTGSGQVTV
LRSYDIMIATARRQTEGALIYVLDRNDLYLRVRDGVRQVMLGDYKPFYGDLDNEVAAVQP
PPVVHYSQDNGAEQISPPDQPIEFPRSEPENRNPNPPDSRYPDPRYPPYTDSRYNPVQPE
IRYPVQPERIPITPARRPSPPVNQPEGHSHTSGPGLHLIALNSPQVGNMRGIRGADFLCF
QQARAVGMKGTFRAFLSSKLQDLYSIVRKSDRETLPIVNLKDQVLFRSWESLFSDSESRI
KDNAPIYSFDGRDVLRDSAWPEKMIWHGSSGRGHRQTDNYCETWRAGDHAVTGLASSLQA
GQLLQQTSSSCSSSYIVLCIENSYMAQSKK
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagctcaggttttggctgtgcctctttattgtggtgtgcttgaggatttgccac
acacatggctggttctggtacgatgactcaaatgcaaagggcaccaagacaccggcctac
ctgtctaccctaaggcccatatcaccaccgaggacagagccgcccagaacagcaggtaca
agtgcttctgtaactgtggtggaaaaagaggtcagttacaatggaggtcattttgagggg
gaatcagagttcatatccaggtccgggttgggggttgagtctgaatctgtaaatgggtct
gaatttgcttctggatccggatctggatcttctcaatttgaaagacaggatgcctatgtt
acgtcaaccaacgtttctggtattgctggtgaaaatgctagtttgcatgtgggaaacctc
aaattggagaccaaagcggaccagatggatggacttcagagcggcagtgacccagcatac
agtcaatttaatgaaagcattaatgttaaaaatgttagcacttataataataataataat
actgagcatgatgagtatgataacacgacgctgtattcctctgaatactctgtctccgat
aatctactaaccattgaaagtgagtattttgtagctcgcatgccggtcgtcgaatcctca
cgctgcttgccagtcgatcctgatttgccattttgcaccagaacgagagaggagagtttc
atggtgcccaattttctaaatcaaagcagcgtggaggaagttcaggtggttttaacccaa
tgggcatggcttttgcggtcaaactgccatcatagtttggaatggtttttctgcctgctg
ttgacaccgcggtgtggcccgcctggactgccgcccccgctgccctgtcgcagtttctgc
gaggtcctgcgtgacagttgctggacactcctggatgagggccgcctccccgtggagtgc
cactctctgcctgaagaaaagcatgatgggtatcggtgcttgtcagttagtaaccagaaa
gaagaaagcggagtgtcactgttacagttaactggcgatcctccacctgatggcgtcacc
aaaacctttgaacatgataacagccccagctatatgtttggcccaaacgccaatgtggga
cagtcagctgcggcccacctgcccaaccctttctaccgtgatttctccctcatcttcaac
ataaaactcatgtctgccaagcctggtgtcatattctccatcactgacccaacccagaac
atcatgtatgttggtgtgaagctgtcggcagtgaaaaacggcaagcaggaaattatcttc
tactacactgagcctgactcgcagagttcatatgaggcggccagattcaccgtgccctca
atgtctatgacctggacccggttttccatcagtgttttgaatgagaaggtttccctctac
ttcaactgtgactcagatcctcaggtcatcaattttgagcggtccccagatgatatggag
ctgaatgccagggctggagtatttgttggccatgctagtggagcagatccagataagttt
gtgggtgttatcggtgatctgagggtggtgggagaccctggggcggctgaacggcactgt
gaagaagaagaggatgactttgatgcgaatctgcagggatcaggtgattttggagcaagt
ggagatggcgaccgaccaccatcagtccagccgacacctccctcctctcggccgatccag
cagccgccggtgaccagcagaacacttgttgagaagcagcagacaggatcagtcgattcc
tctcggcaaactggctcctacggtggttctcgaaaaacatctgactcatatggggatccc
cgaaaaacttctgtctcctacggtgattctcgacaaacctctggctcatatggtgattct
gaacaaacttctggttcatatggtgattcccaacaaacctctggctcatatagcggttct
cgacaatcatcgggcacgtatggtggttctcgacaaactcttgactcggtcgctgttagc
aagcaaacttcggggtcgtatgatgattctagaaaagcttcaaactctctaagaacgtcg
ggctcagctgatgatggaatacggtattctgtggagtccagactgggttctgcaggtcca
acaggttctattggtgcaagaggagagaaaggagacagaggagagaagggtgtcaaaggt
gacaggggccttacagggccaaagggcgattcaggatctggatctgtgtctggtggtgct
gcaaaaggagagaagggtgacacaggagagaaaggaataaagggcagttctggttttggt
tatcctggatcaaagggtgatcgtggtcccgctgggcctccagggcctcccggtcccccc
gggcccagtgcagaggtagaggtgagaggagatgggtcagttcttcaaaaggtggcagga
ccaagaggaccaccaggaccccctggccctcctggagttgatggggagccgggtgaccct
ggtgaagatggaaaagctggccaagttggacctcccggttttcctgggacccctggaccc
aaaggagagaaaggagaccgaggtgaaagtcagccaggaccccgtgggcctccagggcct
cctggtccaccaggacccccctctcgctctgataggcctacatttgtggacatggagggc
tctgggtttgatatggacagtgtgcgggcaatgcccggtttaccaggcccacctggtcct
cctggtccccccggtccccctggccttgcgtcttcaggctccggtggttttgggcctcct
ggtcctcctgggcaaaatggagctccaggtcaacctggacttccaggtccaccaggtgct
gatggaaagccaggctcacctggcccaagaggagagaagggcgatgccggtgagctgggc
ctacctggacctgtgggagagaagggtgccacaggttctcctggttctcctggcctcaat
ggacagggtggacttgctggtcttccaggaccaatgggacccgtcggaccaccagggcca
cctggtcctcctggcccgagctttgttggttttgatgatatggagggttctggtattcac
ttcagttcagtccctggaataagaggaccagtaggaatccagggacctcccggtattcca
ggaccacaaggtaagcctggtttcccaggatttcctggtgagaaaggtagtgaaggacct
cagggacaagatggccgccctggtttggatggcttccctggaccacagggaccaaagggt
gacagaggagaccgaggcgagaggggtgaacctggacgagatggaactagtgttccaggt
ccacccggcccccctggaccacctggacaaattatttatcgttattctgaaactgatgat
gaaattggagtagcagggcctcagggtgggcctggtcgtcctggtcaagcgggattccct
gggccaatgggaccaaagggtgacagaggagaacctggttcaccaggctatgccattaag
ggagataaaggagaacctggaattattcttggacctgatggaaacccatttcaccttggt
ggatcggtaggccaaaagggtgagagagggattcctggaccagtcggacctcctggtcca
gctggacctcctggtttgaaaggtgaatttggaatgccaggcagacctggccgcccaggt
gtgaacggatacaaaggagagaagggagactcagggtcaggcactggatatggttaccca
ggtccccccggtcccccaggaccccctggtccccccggacctgctgtgcccttggacaga
tttggaagatacgaagattattcaaggcaatatacagcaacgaaaggagagaaaggagac
cagggagctcctggcattcccggatcgccaggtttatcctcaaactttgatatctatgcc
ctcaagaatgagatgaagggggagcgcggtgagtccggtcttaaaggagagaaaggagag
ccaggaggtggattttatgaccctcgttttggagcggtacagggaccaccaggaaaccca
ggacttcctggacctaaaggagactcaatcagaggtccccctggaccgcagggcccacca
ggaccacccggggttggttatgatggccgtccaggaaacccaggacctcctggaccccct
ggccctccagggtcaccatcattgccaggagcctacagaccatcactcagtattcccgga
cctccaggtccccctggcccacctggaattcccggcactggatctgggcaggtgactgtc
ctgaggtcttatgacatcatgattgctacggcacgcagacagacagaaggagctctgatt
tatgttctggacagaaacgatctctacctcagagttcgggatggtgtcagacaagtgatg
cttggagattataaacccttctatggagacctggacaatgaggtggcagcggtccaaccg
ccccctgttgttcactattcccaggacaatggagcagagcagatttctccaccggaccag
ccgattgagtttccaaggagcgagccagagaatagaaaccccaatccgcctgactcccgt
tacccagatccacgatacccaccctacactgatagcaggtacaatcctgtacaaccagaa
atcagataccctgttcaacctgagaggatccctatcactccagcccgccgtcccagcccc
cctgtcaatcaaccagaaggccacagccacacttccggaccagggttgcatcttattgcc
ctgaattctccacaagtggggaacatgagaggcattcgtggggcagacttcctgtgcttc
cagcaggctcgggccgtggggatgaagggaacattcagagccttcctgtcttccaaactt
caggatctctacagtatcgtccgcaaatccgacagagagacattaccgattgttaacctc
aaggatcaagtccttttcagaagctgggagtctctcttcagtgactcagagagcaggata
aaggacaatgctcctatctactcctttgatggcagagatgtcctgagggacagtgcctgg
ccagagaagatgatctggcacgggtccagtggcaggggtcacaggcagacggataactac
tgtgagacatggagagccggagaccacgcagtgacaggcttagcctcatctctgcaggct
ggccaactcctccagcagacctccagcagctgctccagttcctacatcgtgctgtgcatc
gagaacagctacatggcacaatccaagaaataa
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